1 dCache_1#1
80-282 aa · 203 aa · 26.6% of protein
Raw token
dCache_1:80:0.0000624:282:207:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DO83_RS05650
Histidine kinase, Hybrid
Anaerostipes hadrus · GCF_001998765
ClassHKTypeHybridLength762 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001998765#DO83_RS05650Stable P2CS identifier used across views.
GenomeGCF_001998765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
dCache_1HisKAHATPase_cResponse_reg
Protein length762 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage504 / 762 aa (66.1%)Merged over positioned domains only.
Domain description1 dCache_1,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa762 aa
Domain-by-domain annotation4 items
2 HisKA#2
369-435 aa · 67 aa · 8.8% of protein
Raw token
HisKA:369:4.3e-18:435:67:643 HATPase_c#3
483-600 aa · 118 aa · 15.5% of protein
Raw token
HATPase_c:483:1.86e-27:600:118:1094 Response_reg#4
627-742 aa · 116 aa · 15.2% of protein
Raw token
Response_reg:627:1.86e-25:742:116:111- Raw architecture: dCache_1:80:0.0000624:282:207:195#HisKA:369:4.3e-18:435:67:64#HATPase_c:483:1.86e-27:600:118:109#Response_reg:627:1.86e-25:742:116:111
- Domain description: 1 dCache_1,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001998765::NZ_CP012098.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1108114-1110402Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDO83_05520RefSeq proteinWP_008393870.1
Context group ID
GCF_001998765::NZ_CP012098.1::G00010Context members
DO83_RS05650
Partner locus tags
DO83_RS05650
Partner old locus tags
DO83_05520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008393870.1Primary protein accession used for annex mappings.
UniProt accessionA0A1Q2C5T1Primary UniProt accession resolved in the annex database.
UniProt IDA0A1Q2C5T1_ANAHADisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDO83_RS05650Primary locus identifier stored in the genes table.
Old locus tagDO83_05520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012098.1Sequence record reported by the local genomic context database.
Genomic interval1 108 114-1 110 402 nt2 289 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 108 114-1 110 402 ntGCF_001998765::NZ_CP012098.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001998765::NZ_CP012098.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012098.1All displayed genes belong to this local TCS context.
Neighborhood span1 108 114-1 110 402 nt2 289 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 108 114 nt1 110 402 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DO83_RS05650GCF_001998765#DO83_RS05650
HKHybridCurrent focus
1 108 114-1 110 402 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001998765#DO83_RS05650The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0638355
Simplified PFAM architecture for HKOC_0638355
PFAM domain coverage: 300 / 762 aa (39.4%)
1 aa762 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[369-435] | HATPase_c[483-599] | Response_reg[627-742]
- Domain count: 3
- Matched identifier: HKOC_0638355
- Positioned domains: HisKA 369-435 ; HATPase_c 483-599 ; Response_reg 627-742
Cluster members and taxonomy
Representative gene: GCF_001998765#DO83_RS05650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001998765
AssemblyASM199876v1 · Complete Genomehaploid
Genome composition3 172 613 bp · 37,5% GCAnaerostipes hadrus
Signal transduction countsGenes 67 · HK 34 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key