1 HAMP#1
39-109 aa · 71 aa · 20.3% of protein
Raw token
HAMP:39:0.00000000179:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAU27_RS23040
Histidine kinase, Classic
Bacillus sp. NH11B · GCF_001884205
ClassHKTypeClassicLength349 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884205#BAU27_RS23040Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length349 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 349 aa (71.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa349 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-185 aa · 66 aa · 18.9% of protein
Raw token
HisKA:120:1.21e-17:185:66:643 HATPase_c#3
238-348 aa · 111 aa · 31.8% of protein
Raw token
HATPase_c:238:6.17e-26:348:111:109- Raw architecture: HAMP:39:0.00000000179:109:71:69#HisKA:120:1.21e-17:185:66:64#HATPase_c:238:6.17e-26:348:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884205::NZ_MAOG01000125.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25339-27098Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAU27_13080RefSeq proteinWP_071772063.1
Context group ID
GCF_001884205::NZ_MAOG01000125.1::G00051Context members
BAU27_RS23035BAU27_RS23040
Partner locus tags
BAU27_RS23035BAU27_RS23040
Partner old locus tags
BAU27_13075BAU27_13080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071772063.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAU27_RS23040Primary locus identifier stored in the genes table.
Old locus tagBAU27_13080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MAOG01000125.1Sequence record reported by the local genomic context database.
Genomic interval26 049-27 098 nt1 050 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 339-27 098 ntGCF_001884205::NZ_MAOG01000125.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884205::NZ_MAOG01000125.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MAOG01000125.1All displayed genes belong to this local TCS context.
Neighborhood span25 339-27 098 nt1 760 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 339 nt27 098 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAU27_RS23035GCF_001884205#BAU27_RS23035
RROmpR
25 339-26 052 nt · Forward (+)
BAU27_RS23040GCF_001884205#BAU27_RS23040
HKClassicCurrent focus
26 049-27 098 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884205#BAU27_RS23040The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2801913
Simplified PFAM architecture for HKOC_2801913
PFAM domain coverage: 230 / 349 aa (65.9%)
1 aa349 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[56-109] | HisKA[121-185] | HATPase_c[238-348]
- Domain count: 3
- Matched identifier: HKOC_2801913
- Positioned domains: HAMP 56-109 ; HisKA 121-185 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_001884205#BAU27_RS23040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 866 314 · GCF_001884205
AssemblyASM188420v1 · Contighaploid
Genome composition5 836 127 bp · 35,0% GCBacillus sp. NH11B
Signal transduction countsGenes 119 · HK 65 · RR 54CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key