1 Response_reg#1
3-112 aa · 110 aa · 49.5% of protein
Raw token
Response_reg:3:4.67e-41:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAU27_RS00550
Response regulator OmpR family
Bacillus sp. NH11B · GCF_001884205
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884205#BAU27_RS00550Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 222 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 33.3% of protein
Raw token
Trans_reg_C:147:1.09e-28:220:77:77- Raw architecture: Response_reg:3:4.67e-41:112:111:111#Trans_reg_C:147:1.09e-28:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884205::NZ_MAOG01000010.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54151-56261Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAU27_20445RefSeq proteinWP_000699582.1
Context group ID
GCF_001884205::NZ_MAOG01000010.1::G00002Context members
BAU27_RS00545BAU27_RS00550
Partner locus tags
BAU27_RS00545BAU27_RS00550
Partner old locus tags
BAU27_20440BAU27_20445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000699582.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAU27_RS00550Primary locus identifier stored in the genes table.
Old locus tagBAU27_20445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MAOG01000010.1Sequence record reported by the local genomic context database.
Genomic interval55 593-56 261 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 151-56 261 ntGCF_001884205::NZ_MAOG01000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884205::NZ_MAOG01000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MAOG01000010.1All displayed genes belong to this local TCS context.
Neighborhood span54 151-56 261 nt2 111 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 151 nt56 261 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAU27_RS00545GCF_001884205#BAU27_RS00545
HKClassic
54 151-55 581 nt · Reverse (-)
BAU27_RS00550GCF_001884205#BAU27_RS00550
RROmpRCurrent focus
55 593-56 261 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884205#BAU27_RS00550The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1643451
Simplified PFAM architecture for RROC_1643451
PFAM domain coverage: 183 / 222 aa (82.4%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[147-220]
- Domain count: 2
- Matched identifier: RROC_1643451
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 147-220 ; Trans_reg_C 147-220
Cluster members and taxonomy
Representative gene: GCF_001884205#BAU27_RS00550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 866 314 · GCF_001884205
AssemblyASM188420v1 · Contighaploid
Genome composition5 836 127 bp · 35,0% GCBacillus sp. NH11B
Signal transduction countsGenes 119 · HK 65 · RR 54CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key