1 GAF#1
26-167 aa · 142 aa · 38.2% of protein
Raw token
GAF:26:0.000000000105:167:144:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAU27_RS15445
Histidine kinase, Classic
Bacillus sp. NH11B · GCF_001884205
ClassHKTypeClassicLength372 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884205#BAU27_RS15445Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFHisKA_3HATPase_c
Protein length372 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage302 / 372 aa (81.2%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa372 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
184-249 aa · 66 aa · 17.7% of protein
Raw token
HisKA_3:184:1.46e-16:249:68:683 HATPase_c#3
279-372 aa · 94 aa · 25.3% of protein
Raw token
HATPase_c:279:0.0000000000000208:372:109:109- Raw architecture: GAF:26:0.000000000105:167:144:133#HisKA_3:184:1.46e-16:249:68:68#HATPase_c:279:0.0000000000000208:372:109:109
- Domain description: 1 GAF,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884205::NZ_MAOG01000101.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span161757-163525Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAU27_05970RefSeq proteinWP_071745188.1
Context group ID
GCF_001884205::NZ_MAOG01000101.1::G00043Context members
BAU27_RS15445BAU27_RS15450
Partner locus tags
BAU27_RS15445BAU27_RS15450
Partner old locus tags
BAU27_05970BAU27_05975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_071745188.1Primary protein accession used for annex mappings.
UniProt accessionA0AA44KWV3Primary UniProt accession resolved in the annex database.
UniProt IDA0AA44KWV3_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAU27_RS15445Primary locus identifier stored in the genes table.
Old locus tagBAU27_05970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MAOG01000101.1Sequence record reported by the local genomic context database.
Genomic interval161 757-162 875 nt1 119 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span161 757-163 525 ntGCF_001884205::NZ_MAOG01000101.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884205::NZ_MAOG01000101.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MAOG01000101.1All displayed genes belong to this local TCS context.
Neighborhood span161 757-163 525 nt1 769 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
161 757 nt163 525 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAU27_RS15445GCF_001884205#BAU27_RS15445
HKClassicCurrent focus
161 757-162 875 nt · Forward (+)
BAU27_RS15450GCF_001884205#BAU27_RS15450
RRNarL
162 890-163 525 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884065#BAQ49_RS10010Use this link to inspect the representative gene detail.
PFAM architectureGAF_2 + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2671059
Simplified PFAM architecture for HKOC_2671059
PFAM domain coverage: 297 / 372 aa (79.8%)
1 aa372 aa
GAF_2HisKA_3HATPase_c
- Simplified architecture: GAF_2 + HisKA_3 + HATPase_c
- Raw architecture: GAF_2[24-168] | HisKA_3[184-248] | HATPase_c[285-371]
- Domain count: 3
- Matched identifier: HKOC_2671059
- Positioned domains: GAF_2 24-168 ; HisKA_3 184-248 ; HATPase_c 285-371
Cluster members and taxonomy
Representative gene: GCF_001884065#BAQ49_RS10010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 866 314 · GCF_001884205
AssemblyASM188420v1 · Contighaploid
Genome composition5 836 127 bp · 35,0% GCBacillus sp. NH11B
Signal transduction countsGenes 119 · HK 65 · RR 54CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key