1 HAMP#1
165-232 aa · 68 aa · 14.3% of protein
Raw token
HAMP:165:0.00000000000156:232:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAU27_RS08170
Histidine kinase, Classic
Bacillus sp. NH11B · GCF_001884205
ClassHKTypeClassicLength474 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001884205#BAU27_RS08170Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length474 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 474 aa (51.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa474 aa
Domain-by-domain annotation3 items
2 HisKA#2
252-316 aa · 65 aa · 13.7% of protein
Raw token
HisKA:252:4.03e-16:316:65:643 HATPase_c#3
360-468 aa · 109 aa · 23.0% of protein
Raw token
HATPase_c:360:6.66e-22:468:110:109- Raw architecture: HAMP:165:0.00000000000156:232:68:69#HisKA:252:4.03e-16:316:65:64#HATPase_c:360:6.66e-22:468:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001884205::NZ_MAOG01000044.1::G00033
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3825-5249Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAU27_27755RefSeq proteinWP_254797948.1
Context group ID
GCF_001884205::NZ_MAOG01000044.1::G00033Context members
BAU27_RS08170
Partner locus tags
BAU27_RS08170
Partner old locus tags
BAU27_27755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254797948.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAU27_RS08170Primary locus identifier stored in the genes table.
Old locus tagBAU27_27755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MAOG01000044.1Sequence record reported by the local genomic context database.
Genomic interval3 825-5 249 nt1 425 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 825-5 249 ntGCF_001884205::NZ_MAOG01000044.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884205::NZ_MAOG01000044.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MAOG01000044.1All displayed genes belong to this local TCS context.
Neighborhood span3 825-5 249 nt1 425 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 825 nt5 249 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BAU27_RS08170GCF_001884205#BAU27_RS08170
HKClassicCurrent focus
3 825-5 249 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884205#BAU27_RS08170The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1676116
Simplified PFAM architecture for HKOC_1676116
PFAM domain coverage: 224 / 474 aa (47.3%)
1 aa474 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[182-232] | HisKA[252-316] | HATPase_c[361-468]
- Domain count: 3
- Matched identifier: HKOC_1676116
- Positioned domains: HAMP 182-232 ; HisKA 252-316 ; HATPase_c 361-468
Cluster members and taxonomy
Representative gene: GCF_001884205#BAU27_RS08170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 866 314 · GCF_001884205
AssemblyASM188420v1 · Contighaploid
Genome composition5 836 127 bp · 35,0% GCBacillus sp. NH11B
Signal transduction countsGenes 119 · HK 65 · RR 54CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key