1 HisKA#1
356-414 aa · 59 aa · 10.2% of protein
Raw token
HisKA:356:0.000000000221:414:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAU23_RS20940
Histidine kinase, Classic
Bacillus nitratireducens · GCF_001884135
ClassHKTypeClassicLength578 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884135#BAU23_RS20940Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length578 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 578 aa (28.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa578 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
471-578 aa · 108 aa · 18.7% of protein
Raw token
HATPase_c:471:4.99e-31:578:108:109- Raw architecture: HisKA:356:0.000000000221:414:59:64#HATPase_c:471:4.99e-31:578:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884135::NZ_MAOC01000078.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span91539-93986Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAU23_21565RefSeq proteinWP_001010428.1
Context group ID
GCF_001884135::NZ_MAOC01000078.1::G00052Context members
BAU23_RS20935BAU23_RS20940
Partner locus tags
BAU23_RS20935BAU23_RS20940
Partner old locus tags
BAU23_21560BAU23_21565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001010428.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAU23_RS20940Primary locus identifier stored in the genes table.
Old locus tagBAU23_21565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MAOC01000078.1Sequence record reported by the local genomic context database.
Genomic interval92 250-93 986 nt1 737 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span91 539-93 986 ntGCF_001884135::NZ_MAOC01000078.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884135::NZ_MAOC01000078.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MAOC01000078.1All displayed genes belong to this local TCS context.
Neighborhood span91 539-93 986 nt2 448 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 539 nt93 986 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAU23_RS20935GCF_001884135#BAU23_RS20935
RROmpR
91 539-92 240 nt · Forward (+)
BAU23_RS20940GCF_001884135#BAU23_RS20940
HKClassicCurrent focus
92 250-93 986 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884135#BAU23_RS20940The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1173016
Simplified PFAM architecture for HKOC_1173016
PFAM domain coverage: 166 / 578 aa (28.7%)
1 aa578 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[356-414] | HATPase_c[471-577]
- Domain count: 2
- Matched identifier: HKOC_1173016
- Positioned domains: HisKA 356-414 ; HATPase_c 471-577
Cluster members and taxonomy
Representative gene: GCF_001884135#BAU23_RS20940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_001884135
AssemblyASM188413v1 · Contighaploid
Genome composition5 487 699 bp · 35,5% GCBacillus nitratireducens
Signal transduction countsGenes 124 · HK 68 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key