1 HAMP#1
181-250 aa · 70 aa · 14.0% of protein
Raw token
HAMP:181:0.00000000000000126:250:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAU23_RS00575
Histidine kinase, Classic
Bacillus nitratireducens · GCF_001884135
ClassHKTypeClassicLength500 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884135#BAU23_RS00575Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length500 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 500 aa (50.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
275-340 aa · 66 aa · 13.2% of protein
Raw token
HisKA:275:0.000000000000654:340:66:643 HATPase_c#3
386-499 aa · 114 aa · 22.8% of protein
Raw token
HATPase_c:386:1.62e-17:499:116:109- Raw architecture: HAMP:181:0.00000000000000126:250:70:69#HisKA:275:0.000000000000654:340:66:64#HATPase_c:386:1.62e-17:499:116:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884135::NZ_MAOC01000003.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41582-43784Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAU23_26950RefSeq proteinWP_071733348.1
Context group ID
GCF_001884135::NZ_MAOC01000003.1::G00001Context members
BAU23_RS00570BAU23_RS00575
Partner locus tags
BAU23_RS00570BAU23_RS00575
Partner old locus tags
BAU23_26945BAU23_26950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071733348.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAU23_RS00575Primary locus identifier stored in the genes table.
Old locus tagBAU23_26950Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MAOC01000003.1Sequence record reported by the local genomic context database.
Genomic interval42 282-43 784 nt1 503 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 582-43 784 ntGCF_001884135::NZ_MAOC01000003.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884135::NZ_MAOC01000003.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MAOC01000003.1All displayed genes belong to this local TCS context.
Neighborhood span41 582-43 784 nt2 203 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 582 nt43 784 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAU23_RS00570GCF_001884135#BAU23_RS00570
RROmpR
41 582-42 268 nt · Forward (+)
BAU23_RS00575GCF_001884135#BAU23_RS00575
HKClassicCurrent focus
42 282-43 784 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884135#BAU23_RS00575The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1475688
Simplified PFAM architecture for HKOC_1475688
PFAM domain coverage: 228 / 500 aa (45.6%)
1 aa500 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[198-250] | HisKA[276-340] | HATPase_c[389-498]
- Domain count: 3
- Matched identifier: HKOC_1475688
- Positioned domains: HAMP 198-250 ; HisKA 276-340 ; HATPase_c 389-498
Cluster members and taxonomy
Representative gene: GCF_001884135#BAU23_RS00575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_001884135
AssemblyASM188413v1 · Contighaploid
Genome composition5 487 699 bp · 35,5% GCBacillus nitratireducens
Signal transduction countsGenes 124 · HK 68 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key