1 Response_reg#1
4-115 aa · 112 aa · 47.7% of protein
Raw token
Response_reg:4:5.11e-28:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ48_RS04730
Response regulator, unclassified
Bacillus luti · GCF_001884105
ClassRRTypeunclassifiedLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001884105#BAQ48_RS04730Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_11
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 235 aa (64.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_11Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 HTH_11#2
168-206 aa · 39 aa · 16.6% of protein
Raw token
HTH_11:168:0.0000193:206:41:52- Raw architecture: Response_reg:4:5.11e-28:115:112:111#HTH_11:168:0.0000193:206:41:52
- Domain description: 1 Response_reg,1 HTH_11
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001884105::NZ_MACI01000017.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span38589-39296Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ48_08045RefSeq proteinWP_071710170.1
Context group ID
GCF_001884105::NZ_MACI01000017.1::G00012Context members
BAQ48_RS04730
Partner locus tags
BAQ48_RS04730
Partner old locus tags
BAQ48_08045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071710170.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ48_RS04730Primary locus identifier stored in the genes table.
Old locus tagBAQ48_08045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACI01000017.1Sequence record reported by the local genomic context database.
Genomic interval38 589-39 296 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span38 589-39 296 ntGCF_001884105::NZ_MACI01000017.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884105::NZ_MACI01000017.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACI01000017.1All displayed genes belong to this local TCS context.
Neighborhood span38 589-39 296 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 589 nt39 296 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BAQ48_RS04730GCF_001884105#BAQ48_RS04730
RRunclassifiedCurrent focus
38 589-39 296 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884105#BAQ48_RS04730The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1021644
Simplified PFAM architecture for RROC_1021644
PFAM domain coverage: 112 / 235 aa (47.7%)
1 aa235 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-115]
- Domain count: 1
- Matched identifier: RROC_1021644
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115
Cluster members and taxonomy
Representative gene: GCF_001884105#BAQ48_RS04730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 191 · GCF_001884105
AssemblyASM188410v1 · Contighaploid
Genome composition5 094 423 bp · 35,5% GCBacillus luti
Signal transduction countsGenes 100 · HK 54 · RR 46CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key