1 GAF_3#1
313-384 aa · 72 aa · 11.6% of protein
Raw token
GAF_3:313:0.0000909:384:73:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ49_RS05090
Histidine kinase, Classic
Bacillus proteolyticus · GCF_001884065
ClassHKTypeClassicLength619 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884065#BAQ49_RS05090Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAF_3HisKA_3HATPase_c
Protein length619 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 619 aa (36.2%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa619 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
403-467 aa · 65 aa · 10.5% of protein
Raw token
HisKA_3:403:3.49e-17:467:65:683 HATPase_c#3
517-603 aa · 87 aa · 14.1% of protein
Raw token
HATPase_c:517:0.0000000000000373:603:97:109- Raw architecture: GAF_3:313:0.0000909:384:73:129#HisKA_3:403:3.49e-17:467:65:68#HATPase_c:517:0.0000000000000373:603:97:109
- Domain description: 1 GAF_3,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884065::NZ_MACH01000048.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span91558-94030Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ49_23605RefSeq proteinWP_071744433.1
Context group ID
GCF_001884065::NZ_MACH01000048.1::G00025Context members
BAQ49_RS05090BAQ49_RS05095
Partner locus tags
BAQ49_RS05090BAQ49_RS05095
Partner old locus tags
BAQ49_23605BAQ49_23610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_071744433.1Primary protein accession used for annex mappings.
UniProt accessionA0AA44KYW9Primary UniProt accession resolved in the annex database.
UniProt IDA0AA44KYW9_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ49_RS05090Primary locus identifier stored in the genes table.
Old locus tagBAQ49_23605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACH01000048.1Sequence record reported by the local genomic context database.
Genomic interval91 558-93 417 nt1 860 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span91 558-94 030 ntGCF_001884065::NZ_MACH01000048.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884065::NZ_MACH01000048.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACH01000048.1All displayed genes belong to this local TCS context.
Neighborhood span91 558-94 030 nt2 473 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 558 nt94 030 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAQ49_RS05090GCF_001884065#BAQ49_RS05090
HKClassicCurrent focus
91 558-93 417 nt · Forward (+)
BAQ49_RS05095GCF_001884065#BAQ49_RS05095
RRNarL
93 392-94 030 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884065#BAQ49_RS05090The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0975393
Simplified PFAM architecture for HKOC_0975393
PFAM domain coverage: 159 / 619 aa (25.7%)
1 aa619 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[403-467] | HATPase_c[511-604]
- Domain count: 2
- Matched identifier: HKOC_0975393
- Positioned domains: HisKA_3 403-467 ; HATPase_c 511-604
Cluster members and taxonomy
Representative gene: GCF_001884065#BAQ49_RS05090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 192 · GCF_001884065
AssemblyASM188406v1 · Contigreference genome · haploid
Genome composition5 859 329 bp · 35,0% GCBacillus proteolyticus
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key