1 PAS_4#1
238-317 aa · 80 aa · 9.8% of protein
Raw token
PAS_4:238:0.0000273:317:84:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ49_RS02660
Histidine kinase, Classic
Bacillus proteolyticus · GCF_001884065
ClassHKTypeClassicLength820 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001884065#BAQ49_RS02660Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_4PASHisKAHATPase_c
Protein length820 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage449 / 820 aa (54.8%)Merged over positioned domains only.
Domain description1 PAS_4,2 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa820 aa
Domain-by-domain annotation5 items
2 PAS#2
329-443 aa · 115 aa · 14.0% of protein
Raw token
PAS:329:0.00000000000127:443:116:1133 PAS#3
467-554 aa · 88 aa · 10.7% of protein
Raw token
PAS:467:0.0000000035:554:90:1134 HisKA#4
598-659 aa · 62 aa · 7.6% of protein
Raw token
HisKA:598:0.0000000000000849:659:62:645 HATPase_c#5
704-807 aa · 104 aa · 12.7% of protein
Raw token
HATPase_c:704:4.92e-25:807:107:109- Raw architecture: PAS_4:238:0.0000273:317:84:110#PAS:329:0.00000000000127:443:116:113#PAS:467:0.0000000035:554:90:113#HisKA:598:0.0000000000000849:659:62:64#HATPase_c:704:4.92e-25:807:107:109
- Domain description: 1 PAS_4,2 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001884065::NZ_MACH01000011.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2474-4936Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ49_21365RefSeq proteinWP_071744083.1
Context group ID
GCF_001884065::NZ_MACH01000011.1::G00013Context members
BAQ49_RS02660
Partner locus tags
BAQ49_RS02660
Partner old locus tags
BAQ49_21365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_071744083.1Primary protein accession used for annex mappings.
UniProt accessionA0AA44KZK9Primary UniProt accession resolved in the annex database.
UniProt IDA0AA44KZK9_9BACIDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ49_RS02660Primary locus identifier stored in the genes table.
Old locus tagBAQ49_21365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACH01000011.1Sequence record reported by the local genomic context database.
Genomic interval2 474-4 936 nt2 463 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 474-4 936 ntGCF_001884065::NZ_MACH01000011.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884065::NZ_MACH01000011.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACH01000011.1All displayed genes belong to this local TCS context.
Neighborhood span2 474-4 936 nt2 463 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 474 nt4 936 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BAQ49_RS02660GCF_001884065#BAQ49_RS02660
HKClassicCurrent focus
2 474-4 936 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884065#BAQ49_RS02660The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + PAS + PAS_9 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0529807
Simplified PFAM architecture for HKOC_0529807
PFAM domain coverage: 503 / 820 aa (61.3%)
1 aa820 aa
5TM-5TMR_LYTPASPAS_9HisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + PAS + PAS_9 + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[21-143] | PAS[329-443] | PAS_9[483-580] | HisKA[598-659] | HATPase_c[704-808]
- Domain count: 5
- Matched identifier: HKOC_0529807
- Positioned domains: 5TM-5TMR_LYT 21-143 ; PAS 329-443 ; PAS_9 483-580 ; HisKA 598-659 ; HATPase_c 704-808
Cluster members and taxonomy
Representative gene: GCF_001884065#BAQ49_RS02660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 192 · GCF_001884065
AssemblyASM188406v1 · Contigreference genome · haploid
Genome composition5 859 329 bp · 35,0% GCBacillus proteolyticus
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key