1 GAF_3#1
237-361 aa · 125 aa · 21.2% of protein
Raw token
GAF_3:237:0.000000153:361:130:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ49_RS01910
Histidine kinase, Classic
Bacillus proteolyticus · GCF_001884065
ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884065#BAQ49_RS01910Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAF_3His_kinaseHATPase_c
Protein length589 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage308 / 589 aa (52.3%)Merged over positioned domains only.
Domain description1 GAF_3,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa589 aa
Domain-by-domain annotation3 items
2 His_kinase#2
375-453 aa · 79 aa · 13.4% of protein
Raw token
His_kinase:375:9e-30:453:80:803 HATPase_c#3
473-576 aa · 104 aa · 17.7% of protein
Raw token
HATPase_c:473:0.00000000000112:576:108:109- Raw architecture: GAF_3:237:0.000000153:361:130:129#His_kinase:375:9e-30:453:80:80#HATPase_c:473:0.00000000000112:576:108:109
- Domain description: 1 GAF_3,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884065::NZ_MACH01000008.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25199-27686Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ49_20645RefSeq proteinWP_071743984.1
Context group ID
GCF_001884065::NZ_MACH01000008.1::G00008Context members
BAQ49_RS01910BAQ49_RS01915
Partner locus tags
BAQ49_RS01910BAQ49_RS01915
Partner old locus tags
BAQ49_20645BAQ49_20650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_071743984.1Primary protein accession used for annex mappings.
UniProt accessionA0AA44R9E5Primary UniProt accession resolved in the annex database.
UniProt IDA0AA44R9E5_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ49_RS01910Primary locus identifier stored in the genes table.
Old locus tagBAQ49_20645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACH01000008.1Sequence record reported by the local genomic context database.
Genomic interval25 199-26 968 nt1 770 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 199-27 686 ntGCF_001884065::NZ_MACH01000008.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884065::NZ_MACH01000008.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACH01000008.1All displayed genes belong to this local TCS context.
Neighborhood span25 199-27 686 nt2 488 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 199 nt27 686 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAQ49_RS01910GCF_001884065#BAQ49_RS01910
HKClassicCurrent focus
25 199-26 968 nt · Forward (+)
BAQ49_RS01915GCF_001884065#BAQ49_RS01915
RRLytTR
26 946-27 686 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884065#BAQ49_RS01910The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + GAF + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1115570
Simplified PFAM architecture for HKOC_1115570
PFAM domain coverage: 484 / 589 aa (82.2%)
1 aa589 aa
5TM-5TMR_LYTGAFHis_kinaseHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + GAF + His_kinase + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[26-204] | GAF[237-359] | His_kinase[375-453] | HATPase_c[473-575]
- Domain count: 4
- Matched identifier: HKOC_1115570
- Positioned domains: 5TM-5TMR_LYT 26-204 ; GAF 237-359 ; His_kinase 375-453 ; HATPase_c 473-575
Cluster members and taxonomy
Representative gene: GCF_001884065#BAQ49_RS01910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 192 · GCF_001884065
AssemblyASM188406v1 · Contigreference genome · haploid
Genome composition5 859 329 bp · 35,0% GCBacillus proteolyticus
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key