1 Response_reg#1
4-112 aa · 109 aa · 48.4% of protein
Raw token
Response_reg:4:8.45e-37:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ49_RS00465
Response regulator OmpR family
Bacillus proteolyticus · GCF_001884065
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884065#BAQ49_RS00465Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 225 aa (83.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-220 aa · 78 aa · 34.7% of protein
Raw token
Trans_reg_C:143:1.65e-27:220:78:77- Raw architecture: Response_reg:4:8.45e-37:112:110:111#Trans_reg_C:143:1.65e-27:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884065::NZ_MACH01000002.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span76451-78510Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ49_04330RefSeq proteinWP_071743766.1
Context group ID
GCF_001884065::NZ_MACH01000002.1::G00001Context members
BAQ49_RS00465BAQ49_RS00470
Partner locus tags
BAQ49_RS00465BAQ49_RS00470
Partner old locus tags
BAQ49_04330BAQ49_04335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_071743766.1Primary protein accession used for annex mappings.
UniProt accessionA0AA44R9Q4Primary UniProt accession resolved in the annex database.
UniProt IDA0AA44R9Q4_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ49_RS00465Primary locus identifier stored in the genes table.
Old locus tagBAQ49_04330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACH01000002.1Sequence record reported by the local genomic context database.
Genomic interval76 451-77 128 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span76 451-78 510 ntGCF_001884065::NZ_MACH01000002.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884065::NZ_MACH01000002.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACH01000002.1All displayed genes belong to this local TCS context.
Neighborhood span76 451-78 510 nt2 060 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 451 nt78 510 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAQ49_RS00465GCF_001884065#BAQ49_RS00465
RROmpRCurrent focus
76 451-77 128 nt · Forward (+)
BAQ49_RS00470GCF_001884065#BAQ49_RS00470
HKClassic
77 140-78 510 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884065#BAQ49_RS00465The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1473809
Simplified PFAM architecture for RROC_1473809
PFAM domain coverage: 185 / 225 aa (82.2%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1473809
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 144-219 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_001884065#BAQ49_RS00465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 192 · GCF_001884065
AssemblyASM188406v1 · Contigreference genome · haploid
Genome composition5 859 329 bp · 35,0% GCBacillus proteolyticus
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key