1 Response_reg#1
3-115 aa · 113 aa · 48.9% of protein
Raw token
Response_reg:3:1.14e-25:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ47_RS23230
Response regulator, unclassified
Bacillus tropicus · GCF_001884035
ClassRRTypeunclassifiedLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884035#BAQ47_RS23230Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 231 aa (84.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
137-177 aa · 41 aa · 17.7% of protein
Raw token
HTH_AraC:137:0.00000000112:177:41:423 HTH_AraC#3
189-228 aa · 40 aa · 17.3% of protein
Raw token
HTH_AraC:189:0.0000000284:228:42:42- Raw architecture: Response_reg:3:1.14e-25:115:113:111#HTH_AraC:137:0.00000000112:177:41:42#HTH_AraC:189:0.0000000284:228:42:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884035::NZ_MACG01000077.1::G00060
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23747-25212Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ47_01895RefSeq proteinWP_071726535.1
Context group ID
GCF_001884035::NZ_MACG01000077.1::G00060Context members
BAQ47_RS23230BAQ47_RS23235
Partner locus tags
BAQ47_RS23230BAQ47_RS23235
Partner old locus tags
BAQ47_01895BAQ47_01900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071726535.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ47_RS23230Primary locus identifier stored in the genes table.
Old locus tagBAQ47_01895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACG01000077.1Sequence record reported by the local genomic context database.
Genomic interval23 747-24 442 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 747-25 212 ntGCF_001884035::NZ_MACG01000077.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884035::NZ_MACG01000077.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACG01000077.1All displayed genes belong to this local TCS context.
Neighborhood span23 747-25 212 nt1 466 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 747 nt25 212 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAQ47_RS23230GCF_001884035#BAQ47_RS23230
RRunclassifiedCurrent focus
23 747-24 442 nt · Reverse (-)
BAQ47_RS23235GCF_001884035#BAQ47_RS23235
HKClassic
24 439-25 212 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884035#BAQ47_RS23230The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_1164559
Simplified PFAM architecture for RROC_1164559
PFAM domain coverage: 191 / 231 aa (82.7%)
1 aa231 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-114] | HTH_18[150-228]
- Domain count: 2
- Matched identifier: RROC_1164559
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; HTH_18 150-228 ; HTH_18 150-228
Cluster members and taxonomy
Representative gene: GCF_001884035#BAQ47_RS23230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 188 · GCF_001884035
AssemblyASM188403v1 · Contighaploid
Genome composition5 217 784 bp · 35,0% GCBacillus tropicus
Signal transduction countsGenes 104 · HK 56 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key