1 HAMP#1
311-378 aa · 68 aa · 11.0% of protein
Raw token
HAMP:311:0.0000000000000962:378:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ47_RS01010
Histidine kinase, Classic
Bacillus tropicus · GCF_001884035
ClassHKTypeClassicLength617 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884035#BAQ47_RS01010Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length617 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 617 aa (39.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa617 aa
Domain-by-domain annotation3 items
2 HisKA#2
398-462 aa · 65 aa · 10.5% of protein
Raw token
HisKA:398:0.00000000000000301:462:65:643 HATPase_c#3
506-613 aa · 108 aa · 17.5% of protein
Raw token
HATPase_c:506:7.03e-21:613:109:109- Raw architecture: HAMP:311:0.0000000000000962:378:68:69#HisKA:398:0.00000000000000301:462:65:64#HATPase_c:506:7.03e-21:613:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884035::NZ_MACG01000008.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25758-28297Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ47_07130RefSeq proteinWP_071722133.1
Context group ID
GCF_001884035::NZ_MACG01000008.1::G00004Context members
BAQ47_RS01005BAQ47_RS01010
Partner locus tags
BAQ47_RS01005BAQ47_RS01010
Partner old locus tags
BAQ47_07125BAQ47_07130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071722133.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ47_RS01010Primary locus identifier stored in the genes table.
Old locus tagBAQ47_07130Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACG01000008.1Sequence record reported by the local genomic context database.
Genomic interval26 444-28 297 nt1 854 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 758-28 297 ntGCF_001884035::NZ_MACG01000008.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884035::NZ_MACG01000008.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACG01000008.1All displayed genes belong to this local TCS context.
Neighborhood span25 758-28 297 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 758 nt28 297 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAQ47_RS01005GCF_001884035#BAQ47_RS01005
RROmpR
25 758-26 447 nt · Forward (+)
BAQ47_RS01010GCF_001884035#BAQ47_RS01010
HKClassicCurrent focus
26 444-28 297 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884035#BAQ47_RS01010The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0982440
Simplified PFAM architecture for HKOC_0982440
PFAM domain coverage: 221 / 617 aa (35.8%)
1 aa617 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[329-378] | HisKA[398-462] | HATPase_c[508-613]
- Domain count: 3
- Matched identifier: HKOC_0982440
- Positioned domains: HAMP 329-378 ; HisKA 398-462 ; HATPase_c 508-613
Cluster members and taxonomy
Representative gene: GCF_001884035#BAQ47_RS01010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 188 · GCF_001884035
AssemblyASM188403v1 · Contighaploid
Genome composition5 217 784 bp · 35,0% GCBacillus tropicus
Signal transduction countsGenes 104 · HK 56 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key