1 Response_reg#1
3-118 aa · 116 aa · 57.7% of protein
Raw token
Response_reg:3:1.13e-18:118:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ47_RS23070
Response regulator NarL family
Bacillus tropicus · GCF_001884035
ClassRRTypeNarLLength201 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001884035#BAQ47_RS23070Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length201 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 201 aa (85.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa201 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
135-190 aa · 56 aa · 27.9% of protein
Raw token
HTH_LUXR:135:6.23e-17:190:56:58- Raw architecture: Response_reg:3:1.13e-18:118:117:111#HTH_LUXR:135:6.23e-17:190:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001884035::NZ_MACG01000076.1::G00059
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span85583-86188Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ47_26910RefSeq proteinWP_071726514.1
Context group ID
GCF_001884035::NZ_MACG01000076.1::G00059Context members
BAQ47_RS23070
Partner locus tags
BAQ47_RS23070
Partner old locus tags
BAQ47_26910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071726514.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ47_RS23070Primary locus identifier stored in the genes table.
Old locus tagBAQ47_26910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACG01000076.1Sequence record reported by the local genomic context database.
Genomic interval85 583-86 188 nt606 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span85 583-86 188 ntGCF_001884035::NZ_MACG01000076.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884035::NZ_MACG01000076.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACG01000076.1All displayed genes belong to this local TCS context.
Neighborhood span85 583-86 188 nt606 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 583 nt86 188 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BAQ47_RS23070GCF_001884035#BAQ47_RS23070
RRNarLCurrent focus
85 583-86 188 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884035#BAQ47_RS23070The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2124020
Simplified PFAM architecture for RROC_2124020
PFAM domain coverage: 169 / 201 aa (84.1%)
1 aa201 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-117] | GerE[136-189]
- Domain count: 2
- Matched identifier: RROC_2124020
- Positioned domains: Response_reg 3-117 ; Response_reg 3-117 ; GerE 136-189 ; GerE 136-189
Cluster members and taxonomy
Representative gene: GCF_001884035#BAQ47_RS23070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 188 · GCF_001884035
AssemblyASM188403v1 · Contighaploid
Genome composition5 217 784 bp · 35,0% GCBacillus tropicus
Signal transduction countsGenes 104 · HK 56 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key