1 Response_reg#1
6-111 aa · 106 aa · 47.1% of protein
Raw token
Response_reg:6:3.6e-32:111:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ47_RS20350
Response regulator OmpR family
Bacillus tropicus · GCF_001884035
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884035#BAQ47_RS20350Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 225 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:147:1.53e-29:222:77:77- Raw architecture: Response_reg:6:3.6e-32:111:107:111#Trans_reg_C:147:1.53e-29:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884035::NZ_MACG01000065.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49679-51734Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ47_24285RefSeq proteinWP_084644676.1
Context group ID
GCF_001884035::NZ_MACG01000065.1::G00054Context members
BAQ47_RS20345BAQ47_RS20350
Partner locus tags
BAQ47_RS20345BAQ47_RS20350
Partner old locus tags
BAQ47_24280BAQ47_24285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_084644676.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ47_RS20350Primary locus identifier stored in the genes table.
Old locus tagBAQ47_24285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACG01000065.1Sequence record reported by the local genomic context database.
Genomic interval51 057-51 734 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span49 679-51 734 ntGCF_001884035::NZ_MACG01000065.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884035::NZ_MACG01000065.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACG01000065.1All displayed genes belong to this local TCS context.
Neighborhood span49 679-51 734 nt2 056 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 679 nt51 734 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAQ47_RS20345GCF_001884035#BAQ47_RS20345
HKClassic
49 679-51 055 nt · Reverse (-)
BAQ47_RS20350GCF_001884035#BAQ47_RS20350
RROmpRCurrent focus
51 057-51 734 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884035#BAQ47_RS20350The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1473803
Simplified PFAM architecture for RROC_1473803
PFAM domain coverage: 182 / 225 aa (80.9%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-111] | Trans_reg_C[147-222]
- Domain count: 2
- Matched identifier: RROC_1473803
- Positioned domains: Response_reg 6-111 ; Response_reg 6-111 ; Trans_reg_C 147-222 ; Trans_reg_C 147-222
Cluster members and taxonomy
Representative gene: GCF_001884035#BAQ47_RS20350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 188 · GCF_001884035
AssemblyASM188403v1 · Contighaploid
Genome composition5 217 784 bp · 35,0% GCBacillus tropicus
Signal transduction countsGenes 104 · HK 56 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key