1 Response_reg#1
3-112 aa · 110 aa · 51.2% of protein
Raw token
Response_reg:3:1e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ47_RS17145
Response regulator OmpR family
Bacillus tropicus · GCF_001884035
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884035#BAQ47_RS17145Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 215 aa (84.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
139-210 aa · 72 aa · 33.5% of protein
Raw token
Trans_reg_C:139:1.54e-27:210:77:77- Raw architecture: Response_reg:3:1e-32:112:111:111#Trans_reg_C:139:1.54e-27:210:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884035::NZ_MACG01000051.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span372261-374277Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ47_21780RefSeq proteinWP_071725707.1
Context group ID
GCF_001884035::NZ_MACG01000051.1::G00045Context members
BAQ47_RS17140BAQ47_RS17145
Partner locus tags
BAQ47_RS17140BAQ47_RS17145
Partner old locus tags
BAQ47_21775BAQ47_21780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071725707.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ47_RS17145Primary locus identifier stored in the genes table.
Old locus tagBAQ47_21780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACG01000051.1Sequence record reported by the local genomic context database.
Genomic interval373 630-374 277 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span372 261-374 277 ntGCF_001884035::NZ_MACG01000051.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884035::NZ_MACG01000051.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACG01000051.1All displayed genes belong to this local TCS context.
Neighborhood span372 261-374 277 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
372 261 nt374 277 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAQ47_RS17140GCF_001884035#BAQ47_RS17140
HKClassic
372 261-373 637 nt · Reverse (-)
BAQ47_RS17145GCF_001884035#BAQ47_RS17145
RROmpRCurrent focus
373 630-374 277 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884035#BAQ47_RS17145The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1910928
Simplified PFAM architecture for RROC_1910928
PFAM domain coverage: 180 / 215 aa (83.7%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[140-210]
- Domain count: 2
- Matched identifier: RROC_1910928
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 140-210 ; Trans_reg_C 140-210
Cluster members and taxonomy
Representative gene: GCF_001884035#BAQ47_RS17145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 188 · GCF_001884035
AssemblyASM188403v1 · Contighaploid
Genome composition5 217 784 bp · 35,0% GCBacillus tropicus
Signal transduction countsGenes 104 · HK 56 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key