1 HAMP#1
161-229 aa · 69 aa · 14.9% of protein
Raw token
HAMP:161:0.000000000000002:229:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ45_RS27320
Histidine kinase, Classic
Bacillus pacificus · GCF_001884025
ClassHKTypeClassicLength463 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884025#BAQ45_RS27320Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length463 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 463 aa (52.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa463 aa
Domain-by-domain annotation3 items
2 HisKA#2
234-299 aa · 66 aa · 14.3% of protein
Raw token
HisKA:234:0.0000000000000228:299:66:643 HATPase_c#3
346-454 aa · 109 aa · 23.5% of protein
Raw token
HATPase_c:346:1.45e-34:454:109:109- Raw architecture: HAMP:161:0.000000000000002:229:69:69#HisKA:234:0.0000000000000228:299:66:64#HATPase_c:346:1.45e-34:454:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884025::NZ_MACD01000097.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75409-77489Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ45_21920RefSeq proteinWP_000822567.1
Context group ID
GCF_001884025::NZ_MACD01000097.1::G00054Context members
BAQ45_RS27315BAQ45_RS27320
Partner locus tags
BAQ45_RS27315BAQ45_RS27320
Partner old locus tags
BAQ45_21915BAQ45_21920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000822567.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP5FY40Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP5FY40_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ45_RS27320Primary locus identifier stored in the genes table.
Old locus tagBAQ45_21920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACD01000097.1Sequence record reported by the local genomic context database.
Genomic interval76 098-77 489 nt1 392 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span75 409-77 489 ntGCF_001884025::NZ_MACD01000097.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884025::NZ_MACD01000097.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACD01000097.1All displayed genes belong to this local TCS context.
Neighborhood span75 409-77 489 nt2 081 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 409 nt77 489 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAQ45_RS27315GCF_001884025#BAQ45_RS27315
RROmpR
75 409-76 086 nt · Forward (+)
BAQ45_RS27320GCF_001884025#BAQ45_RS27320
HKClassicCurrent focus
76 098-77 489 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884025#BAQ45_RS27320The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1797208
Simplified PFAM architecture for HKOC_1797208
PFAM domain coverage: 226 / 463 aa (48.8%)
1 aa463 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-229] | HisKA[235-299] | HATPase_c[346-454]
- Domain count: 3
- Matched identifier: HKOC_1797208
- Positioned domains: HAMP 178-229 ; HisKA 235-299 ; HATPase_c 346-454
Cluster members and taxonomy
Representative gene: GCF_001884025#BAQ45_RS27320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 187 · GCF_001884025
AssemblyASM188402v1 · Contighaploid
Genome composition5 416 792 bp · 35,0% GCBacillus pacificus
Signal transduction countsGenes 102 · HK 54 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key