1 Response_reg#1
4-116 aa · 113 aa · 56.5% of protein
Raw token
Response_reg:4:2.22e-26:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ45_RS04315
Response regulator NarL family
Bacillus pacificus · GCF_001884025
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884025#BAQ45_RS04315Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 200 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
139-194 aa · 56 aa · 28.0% of protein
Raw token
HTH_LUXR:139:9.68e-21:194:56:58- Raw architecture: Response_reg:4:2.22e-26:116:113:111#HTH_LUXR:139:9.68e-21:194:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884025::NZ_MACD01000005.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51832-53561Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ45_27345RefSeq proteinWP_000619253.1
Context group ID
GCF_001884025::NZ_MACD01000005.1::G00004Context members
BAQ45_RS04315BAQ45_RS04320
Partner locus tags
BAQ45_RS04315BAQ45_RS04320
Partner old locus tags
BAQ45_27345BAQ45_27350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000619253.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP4CPR1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP4CPR1_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ45_RS04315Primary locus identifier stored in the genes table.
Old locus tagBAQ45_27345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACD01000005.1Sequence record reported by the local genomic context database.
Genomic interval51 832-52 434 nt603 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 832-53 561 ntGCF_001884025::NZ_MACD01000005.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884025::NZ_MACD01000005.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACD01000005.1All displayed genes belong to this local TCS context.
Neighborhood span51 832-53 561 nt1 730 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 832 nt53 561 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAQ45_RS04315GCF_001884025#BAQ45_RS04315
RRNarLCurrent focus
51 832-52 434 nt · Reverse (-)
BAQ45_RS04320GCF_001884025#BAQ45_RS04320
HKClassic
52 431-53 561 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884025#BAQ45_RS04315The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2135990
Simplified PFAM architecture for RROC_2135990
PFAM domain coverage: 168 / 200 aa (84.0%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-115] | GerE[139-194]
- Domain count: 2
- Matched identifier: RROC_2135990
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GerE 139-194 ; GerE 139-194
Cluster members and taxonomy
Representative gene: GCF_001884025#BAQ45_RS04315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 187 · GCF_001884025
AssemblyASM188402v1 · Contighaploid
Genome composition5 416 792 bp · 35,0% GCBacillus pacificus
Signal transduction countsGenes 102 · HK 54 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key