1 GAF#1
23-163 aa · 141 aa · 20.9% of protein
Raw token
GAF:23:5.78e-17:163:143:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ45_RS23220
Histidine kinase, Classic
Bacillus pacificus · GCF_001884025
ClassHKTypeClassicLength676 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001884025#BAQ45_RS23220Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFPAS_4HisKAHATPase_c
Protein length676 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage396 / 676 aa (58.6%)Merged over positioned domains only.
Domain description1 GAF,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa676 aa
Domain-by-domain annotation4 items
2 PAS_4#2
348-448 aa · 101 aa · 14.9% of protein
Raw token
PAS_4:348:0.000001:448:109:1103 HisKA#3
463-518 aa · 56 aa · 8.3% of protein
Raw token
HisKA:463:0.0000000000000308:518:56:644 HATPase_c#4
572-669 aa · 98 aa · 14.5% of protein
Raw token
HATPase_c:572:3.69e-18:669:103:109- Raw architecture: GAF:23:5.78e-17:163:143:133#PAS_4:348:0.000001:448:109:110#HisKA:463:0.0000000000000308:518:56:64#HATPase_c:572:3.69e-18:669:103:109
- Domain description: 1 GAF,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001884025::NZ_MACD01000080.1::G00046
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span49945-51975Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ45_18285RefSeq proteinWP_000947578.1
Context group ID
GCF_001884025::NZ_MACD01000080.1::G00046Context members
BAQ45_RS23220
Partner locus tags
BAQ45_RS23220
Partner old locus tags
BAQ45_18285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000947578.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP4CMU0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP4CMU0_9BACIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ45_RS23220Primary locus identifier stored in the genes table.
Old locus tagBAQ45_18285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACD01000080.1Sequence record reported by the local genomic context database.
Genomic interval49 945-51 975 nt2 031 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 945-51 975 ntGCF_001884025::NZ_MACD01000080.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884025::NZ_MACD01000080.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACD01000080.1All displayed genes belong to this local TCS context.
Neighborhood span49 945-51 975 nt2 031 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 945 nt51 975 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BAQ45_RS23220GCF_001884025#BAQ45_RS23220
HKClassicCurrent focus
49 945-51 975 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884025#BAQ45_RS23220The current gene is the representative for this cluster.
PFAM architectureGAF + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0828073
Simplified PFAM architecture for HKOC_0828073
PFAM domain coverage: 399 / 676 aa (59.0%)
1 aa676 aa
GAFPAS_4HisKAHATPase_c
- Simplified architecture: GAF + PAS_4 + HisKA + HATPase_c
- Raw architecture: GAF[24-163] | PAS_4[348-447] | HisKA[463-519] | HATPase_c[569-670]
- Domain count: 4
- Matched identifier: HKOC_0828073
- Positioned domains: GAF 24-163 ; PAS_4 348-447 ; HisKA 463-519 ; HATPase_c 569-670
Cluster members and taxonomy
Representative gene: GCF_001884025#BAQ45_RS23220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 187 · GCF_001884025
AssemblyASM188402v1 · Contighaploid
Genome composition5 416 792 bp · 35,0% GCBacillus pacificus
Signal transduction countsGenes 102 · HK 54 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key