1 HAMP#1
303-370 aa · 68 aa · 11.2% of protein
Raw token
HAMP:303:0.000000000000146:370:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ45_RS22290
Histidine kinase, Classic
Bacillus pacificus · GCF_001884025
ClassHKTypeClassicLength609 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884025#BAQ45_RS22290Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length609 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 609 aa (40.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa609 aa
Domain-by-domain annotation3 items
2 HisKA#2
390-454 aa · 65 aa · 10.7% of protein
Raw token
HisKA:390:0.00000000000000595:454:65:643 HATPase_c#3
498-608 aa · 111 aa · 18.2% of protein
Raw token
HATPase_c:498:6.52e-22:608:112:109- Raw architecture: HAMP:303:0.000000000000146:370:68:69#HisKA:390:0.00000000000000595:454:65:64#HATPase_c:498:6.52e-22:608:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884025::NZ_MACD01000075.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14989-17504Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ45_17365RefSeq proteinWP_001225333.1
Context group ID
GCF_001884025::NZ_MACD01000075.1::G00043Context members
BAQ45_RS22285BAQ45_RS22290
Partner locus tags
BAQ45_RS22285BAQ45_RS22290
Partner old locus tags
BAQ45_17360BAQ45_17365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001225333.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ45_RS22290Primary locus identifier stored in the genes table.
Old locus tagBAQ45_17365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACD01000075.1Sequence record reported by the local genomic context database.
Genomic interval15 675-17 504 nt1 830 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 989-17 504 ntGCF_001884025::NZ_MACD01000075.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884025::NZ_MACD01000075.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACD01000075.1All displayed genes belong to this local TCS context.
Neighborhood span14 989-17 504 nt2 516 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 989 nt17 504 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAQ45_RS22285GCF_001884025#BAQ45_RS22285
RROmpR
14 989-15 678 nt · Forward (+)
BAQ45_RS22290GCF_001884025#BAQ45_RS22290
HKClassicCurrent focus
15 675-17 504 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884025#BAQ45_RS22290The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1009236
Simplified PFAM architecture for HKOC_1009236
PFAM domain coverage: 224 / 609 aa (36.8%)
1 aa609 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[321-370] | HisKA[390-454] | HATPase_c[500-608]
- Domain count: 3
- Matched identifier: HKOC_1009236
- Positioned domains: HAMP 321-370 ; HisKA 390-454 ; HATPase_c 500-608
Cluster members and taxonomy
Representative gene: GCF_001884025#BAQ45_RS22290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 187 · GCF_001884025
AssemblyASM188402v1 · Contighaploid
Genome composition5 416 792 bp · 35,0% GCBacillus pacificus
Signal transduction countsGenes 102 · HK 54 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key