1 HAMP#1
63-130 aa · 68 aa · 18.5% of protein
Raw token
HAMP:63:0.000000713:130:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ45_RS18190
Histidine kinase, Classic
Bacillus pacificus · GCF_001884025
ClassHKTypeClassicLength368 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884025#BAQ45_RS18190Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length368 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 368 aa (67.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa368 aa
Domain-by-domain annotation3 items
2 HisKA#2
141-208 aa · 68 aa · 18.5% of protein
Raw token
HisKA:141:0.000000000000742:208:68:643 HATPase_c#3
253-364 aa · 112 aa · 30.4% of protein
Raw token
HATPase_c:253:1.41e-25:364:113:109- Raw architecture: HAMP:63:0.000000713:130:68:69#HisKA:141:0.000000000000742:208:68:64#HATPase_c:253:1.41e-25:364:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884025::NZ_MACD01000048.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20539-22336Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ45_01665RefSeq proteinWP_001284574.1
Context group ID
GCF_001884025::NZ_MACD01000048.1::G00040Context members
BAQ45_RS18190BAQ45_RS18195
Partner locus tags
BAQ45_RS18190BAQ45_RS18195
Partner old locus tags
BAQ45_01665BAQ45_01670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001284574.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP4CNT4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP4CNT4_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ45_RS18190Primary locus identifier stored in the genes table.
Old locus tagBAQ45_01665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACD01000048.1Sequence record reported by the local genomic context database.
Genomic interval20 539-21 645 nt1 107 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 539-22 336 ntGCF_001884025::NZ_MACD01000048.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884025::NZ_MACD01000048.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACD01000048.1All displayed genes belong to this local TCS context.
Neighborhood span20 539-22 336 nt1 798 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 539 nt22 336 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAQ45_RS18190GCF_001884025#BAQ45_RS18190
HKClassicCurrent focus
20 539-21 645 nt · Reverse (-)
BAQ45_RS18195GCF_001884025#BAQ45_RS18195
RROmpR
21 638-22 336 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884025#BAQ45_RS18190The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2699033
Simplified PFAM architecture for HKOC_2699033
PFAM domain coverage: 177 / 368 aa (48.1%)
1 aa368 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[142-207] | HATPase_c[253-363]
- Domain count: 2
- Matched identifier: HKOC_2699033
- Positioned domains: HisKA 142-207 ; HATPase_c 253-363
Cluster members and taxonomy
Representative gene: GCF_001884025#BAQ45_RS18190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 187 · GCF_001884025
AssemblyASM188402v1 · Contighaploid
Genome composition5 416 792 bp · 35,0% GCBacillus pacificus
Signal transduction countsGenes 102 · HK 54 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key