1 Response_reg#1
3-108 aa · 106 aa · 44.5% of protein
Raw token
Response_reg:3:0.000000000658:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ45_RS04625
Response regulator LytTR family
Bacillus pacificus · GCF_001884025
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001884025#BAQ45_RS04625Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 238 aa (87.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-237 aa · 102 aa · 42.9% of protein
Raw token
LytTR:136:1.81e-30:237:102:98- Raw architecture: Response_reg:3:0.000000000658:108:108:111#LytTR:136:1.81e-30:237:102:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001884025::NZ_MACD01000005.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span119653-120369Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ45_27655RefSeq proteinWP_000698249.1
Context group ID
GCF_001884025::NZ_MACD01000005.1::G00006Context members
BAQ45_RS04625
Partner locus tags
BAQ45_RS04625
Partner old locus tags
BAQ45_27655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000698249.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP4FKE0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP4FKE0_9BACIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ45_RS04625Primary locus identifier stored in the genes table.
Old locus tagBAQ45_27655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACD01000005.1Sequence record reported by the local genomic context database.
Genomic interval119 653-120 369 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span119 653-120 369 ntGCF_001884025::NZ_MACD01000005.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884025::NZ_MACD01000005.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACD01000005.1All displayed genes belong to this local TCS context.
Neighborhood span119 653-120 369 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 653 nt120 369 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BAQ45_RS04625GCF_001884025#BAQ45_RS04625
RRLytTRCurrent focus
119 653-120 369 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884025#BAQ45_RS04625The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0937470
Simplified PFAM architecture for RROC_0937470
PFAM domain coverage: 204 / 238 aa (85.7%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-109] | LytTR[138-236]
- Domain count: 2
- Matched identifier: RROC_0937470
- Positioned domains: Response_reg 5-109 ; Response_reg 5-109 ; LytTR 138-236 ; LytTR 138-236
Cluster members and taxonomy
Representative gene: GCF_001884025#BAQ45_RS04625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 187 · GCF_001884025
AssemblyASM188402v1 · Contighaploid
Genome composition5 416 792 bp · 35,0% GCBacillus pacificus
Signal transduction countsGenes 102 · HK 54 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key