1 Response_reg#1
3-106 aa · 104 aa · 47.9% of protein
Raw token
Response_reg:3:1.25e-19:106:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BFS25_RS08870
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_001870755
ClassRRTypeNarLLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001870755#BFS25_RS08870Stable P2CS identifier used across views.
GenomeGCF_001870755Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 217 aa (72.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-211 aa · 54 aa · 24.9% of protein
Raw token
HTH_LUXR:158:6.89e-20:211:54:58- Raw architecture: Response_reg:3:1.25e-19:106:104:111#HTH_LUXR:158:6.89e-20:211:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001870755::NZ_MOAF01000038.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31144-33149Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBFS25_08875RefSeq proteinWP_071478504.1
Context group ID
GCF_001870755::NZ_MOAF01000038.1::G00016Context members
BFS25_RS08870BFS25_RS08875
Partner locus tags
BFS25_RS08870BFS25_RS08875
Partner old locus tags
BFS25_08875BFS25_08880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071478504.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBFS25_RS08870Primary locus identifier stored in the genes table.
Old locus tagBFS25_08875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOAF01000038.1Sequence record reported by the local genomic context database.
Genomic interval31 144-31 797 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 144-33 149 ntGCF_001870755::NZ_MOAF01000038.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001870755::NZ_MOAF01000038.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOAF01000038.1All displayed genes belong to this local TCS context.
Neighborhood span31 144-33 149 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 144 nt33 149 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BFS25_RS08870GCF_001870755#BFS25_RS08870
RRNarLCurrent focus
31 144-31 797 nt · Reverse (-)
BFS25_RS08875GCF_001870755#BFS25_RS08875
HKClassic
31 797-33 149 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001870755#BFS25_RS08870The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1851992
Simplified PFAM architecture for RROC_1851992
PFAM domain coverage: 158 / 217 aa (72.8%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-107] | GerE[158-210]
- Domain count: 2
- Matched identifier: RROC_1851992
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; GerE 158-210 ; GerE 158-210
Cluster members and taxonomy
Representative gene: GCF_001870755#BFS25_RS08870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_001870755
AssemblyASM187075v1 · Scaffoldhaploid
Genome composition2 640 127 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 32 · HK 12 · RR 18CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key