1 Response_reg#1
13-128 aa · 116 aa · 52.3% of protein
Raw token
Response_reg:13:9.8e-17:128:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BFS25_RS00245
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_001870755
ClassRRTypeNarLLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001870755#BFS25_RS00245Stable P2CS identifier used across views.
GenomeGCF_001870755Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 222 aa (76.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-211 aa · 53 aa · 23.9% of protein
Raw token
HTH_LUXR:159:8.98e-17:211:53:58- Raw architecture: Response_reg:13:9.8e-17:128:116:111#HTH_LUXR:159:8.98e-17:211:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001870755::NZ_MOAF01000008.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2026-2694Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBFS25_00245RefSeq proteinWP_071477521.1
Context group ID
GCF_001870755::NZ_MOAF01000008.1::G00001Context members
BFS25_RS00245
Partner locus tags
BFS25_RS00245
Partner old locus tags
BFS25_00245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071477521.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBFS25_RS00245Primary locus identifier stored in the genes table.
Old locus tagBFS25_00245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOAF01000008.1Sequence record reported by the local genomic context database.
Genomic interval2 026-2 694 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 026-2 694 ntGCF_001870755::NZ_MOAF01000008.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001870755::NZ_MOAF01000008.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOAF01000008.1All displayed genes belong to this local TCS context.
Neighborhood span2 026-2 694 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 026 nt2 694 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BFS25_RS00245GCF_001870755#BFS25_RS00245
RRNarLCurrent focus
2 026-2 694 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001870755#BFS25_RS00245The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1643431
Simplified PFAM architecture for RROC_1643431
PFAM domain coverage: 168 / 222 aa (75.7%)
1 aa222 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[13-128] | GerE[161-212]
- Domain count: 2
- Matched identifier: RROC_1643431
- Positioned domains: Response_reg 13-128 ; Response_reg 13-128 ; GerE 161-212 ; GerE 161-212
Cluster members and taxonomy
Representative gene: GCF_001870755#BFS25_RS00245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_001870755
AssemblyASM187075v1 · Scaffoldhaploid
Genome composition2 640 127 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 32 · HK 12 · RR 18CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key