1 HAMP#1
167-236 aa · 70 aa · 14.6% of protein
Raw token
HAMP:167:3.87e-16:236:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IU10_RS03765
Histidine kinase, Classic
Escherichia coli · GCF_001816285
ClassHKTypeClassicLength480 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001816285#IU10_RS03765Stable P2CS identifier used across views.
GenomeGCF_001816285Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length480 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 480 aa (51.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
240-304 aa · 65 aa · 13.5% of protein
Raw token
HisKA:240:0.00000000000000822:304:65:643 HATPase_c#3
349-461 aa · 113 aa · 23.5% of protein
Raw token
HATPase_c:349:6.29e-29:461:113:109- Raw architecture: HAMP:167:3.87e-16:236:70:69#HisKA:240:0.00000000000000822:304:65:64#HATPase_c:349:6.29e-29:461:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001816285::NZ_JPQR01000016.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41492-43614Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001816285::NZ_JPQR01000016.1::G00016Context members
IU10_RS03765IU10_RS03770
Partner locus tags
IU10_RS03765IU10_RS03770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070749856.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIU10_RS03765Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JPQR01000016.1Sequence record reported by the local genomic context database.
Genomic interval41 492-42 934 nt1 443 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 492-43 614 ntGCF_001816285::NZ_JPQR01000016.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001816285::NZ_JPQR01000016.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JPQR01000016.1All displayed genes belong to this local TCS context.
Neighborhood span41 492-43 614 nt2 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 492 nt43 614 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IU10_RS03765GCF_001816285#IU10_RS03765
HKClassicCurrent focus
41 492-42 934 nt · Forward (+)
IU10_RS03770GCF_001816285#IU10_RS03770
RROmpR
42 892-43 614 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001816285#IU10_RS03765The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1620611
Simplified PFAM architecture for HKOC_1620611
PFAM domain coverage: 229 / 480 aa (47.7%)
1 aa480 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-235] | HisKA[240-304] | HATPase_c[349-460]
- Domain count: 3
- Matched identifier: HKOC_1620611
- Positioned domains: HAMP 184-235 ; HisKA 240-304 ; HATPase_c 349-460
Cluster members and taxonomy
Representative gene: GCF_001816285#IU10_RS03765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_001816285
AssemblyASM181628v1 · Scaffoldhaploid
Genome composition4 975 133 bp · 50,5% GCEscherichia coli
Signal transduction countsGenes 62 · HK 30 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key