1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:8e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE9_RS18740
Response regulator OmpR family
Bacillus mycoides · GCF_001757845
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001757845#BWGOE9_RS18740Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:153:2.97e-32:229:77:77- Raw architecture: Response_reg:5:8e-40:114:111:111#Trans_reg_C:153:2.97e-32:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001757845::NZ_LXLU01000061.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span222-1990Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE9_38300RefSeq proteinWP_070144483.1
Context group ID
GCF_001757845::NZ_LXLU01000061.1::G00050Context members
BWGOE9_RS18740BWGOE9_RS18745
Partner locus tags
BWGOE9_RS18740BWGOE9_RS18745
Partner old locus tags
BWGOE9_38300BWGOE9_38310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_070144483.1Primary protein accession used for annex mappings.
UniProt accessionA0A1E8BBZ7Primary UniProt accession resolved in the annex database.
UniProt IDA0A1E8BBZ7_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE9_RS18740Primary locus identifier stored in the genes table.
Old locus tagBWGOE9_38300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLU01000061.1Sequence record reported by the local genomic context database.
Genomic interval222-935 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span222-1 990 ntGCF_001757845::NZ_LXLU01000061.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757845::NZ_LXLU01000061.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLU01000061.1All displayed genes belong to this local TCS context.
Neighborhood span222-1 990 nt1 769 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
222 nt1 990 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BWGOE9_RS18740GCF_001757845#BWGOE9_RS18740
RROmpRCurrent focus
222-935 nt · Forward (+)
BWGOE9_RS18745GCF_001757845#BWGOE9_RS18745
HKClassic
932-1 990 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757835#BWGOE8_RS04860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0965813
Simplified PFAM architecture for RROC_0965813
PFAM domain coverage: 186 / 237 aa (78.5%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_0965813
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 153-229 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_001757835#BWGOE8_RS04860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757845
AssemblyASM175784v1 · Contighaploid
Genome composition5 846 892 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 120 · HK 67 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key