1 HAMP#1
82-159 aa · 78 aa · 19.7% of protein
Raw token
HAMP:82:0.00000000861:159:78:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BW27_RS07865
Histidine kinase, Classic
Clostridioides difficile · GCF_001757625
ClassHKTypeClassicLength395 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001757625#BW27_RS07865Stable P2CS identifier used across views.
GenomeGCF_001757625Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length395 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 395 aa (63.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa395 aa
Domain-by-domain annotation3 items
2 HisKA#2
171-236 aa · 66 aa · 16.7% of protein
Raw token
HisKA:171:0.00000000124:236:66:643 HATPase_c#3
286-392 aa · 107 aa · 27.1% of protein
Raw token
HATPase_c:286:2.48e-26:392:107:109- Raw architecture: HAMP:82:0.00000000861:159:78:69#HisKA:171:0.00000000124:236:66:64#HATPase_c:286:2.48e-26:392:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001757625::NZ_JFOG01000022.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span78335-80470Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBW27_06470RefSeq proteinWP_330388067.1
Context group ID
GCF_001757625::NZ_JFOG01000022.1::G00016Context members
BW27_RS07860BW27_RS07865
Partner locus tags
BW27_RS07860BW27_RS07865
Partner old locus tags
BW27_06465BW27_06470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330388067.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBW27_RS07865Primary locus identifier stored in the genes table.
Old locus tagBW27_06470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JFOG01000022.1Sequence record reported by the local genomic context database.
Genomic interval79 283-80 470 nt1 188 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span78 335-80 470 ntGCF_001757625::NZ_JFOG01000022.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757625::NZ_JFOG01000022.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JFOG01000022.1All displayed genes belong to this local TCS context.
Neighborhood span78 335-80 470 nt2 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 335 nt80 470 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BW27_RS07860GCF_001757625#BW27_RS07860
RROmpR
78 335-79 027 nt · Forward (+)
BW27_RS07865GCF_001757625#BW27_RS07865
HKClassicCurrent focus
79 283-80 470 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003482305#CDIF29629_RS02995Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1677553
Simplified PFAM architecture for HKOC_1677553
PFAM domain coverage: 223 / 474 aa (47.0%)
1 aa474 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[188-238] | HisKA[251-315] | HATPase_c[365-471]
- Domain count: 3
- Matched identifier: HKOC_1677553
- Positioned domains: HAMP 188-238 ; HisKA 251-315 ; HATPase_c 365-471
Cluster members and taxonomy
Representative gene: GCF_003482305#CDIF29629_RS02995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001757625
AssemblyASM175762v1 · Contighaploid
Genome composition4 180 898 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key