1 Response_reg#1
12-97 aa · 86 aa · 60.1% of protein
Raw token
Response_reg:12:4.38e-16:97:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBK15_RS01815
Response regulator, CheY family
Bifidobacterium adolescentis · GCF_001756865
ClassRRTypeCheYLength143 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001756865#BBK15_RS01815Stable P2CS identifier used across views.
GenomeGCF_001756865Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length143 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage86 / 143 aa (60.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa143 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:12:4.38e-16:97:86:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001756865::NZ_MAXD01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span414339-414770Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBK15_01815RefSeq proteinWP_256161925.1
Context group ID
GCF_001756865::NZ_MAXD01000001.1::G00004Context members
BBK15_RS01815
Partner locus tags
BBK15_RS01815
Partner old locus tags
BBK15_01815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256161925.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBK15_RS01815Primary locus identifier stored in the genes table.
Old locus tagBBK15_01815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MAXD01000001.1Sequence record reported by the local genomic context database.
Genomic interval414 339-414 770 nt432 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span414 339-414 770 ntGCF_001756865::NZ_MAXD01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001756865::NZ_MAXD01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MAXD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span414 339-414 770 nt432 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
414 339 nt414 770 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BBK15_RS01815GCF_001756865#BBK15_RS01815
RRCheYCurrent focus
414 339-414 770 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001756865#BBK15_RS01815The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2255608
Simplified PFAM architecture for RROC_2255608
PFAM domain coverage: 91 / 143 aa (63.6%)
1 aa143 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[12-102]
- Domain count: 1
- Matched identifier: RROC_2255608
- Positioned domains: Response_reg 12-102 ; Response_reg 12-102
Cluster members and taxonomy
Representative gene: GCF_001756865#BBK15_RS01815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_001756865
AssemblyASM175686v1 · Contighaploid
Genome composition2 424 972 bp · 60,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key