1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:1.18e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DCP99_RS18215
Response regulator OmpR family
Clostridioides difficile · GCF_001704805
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001704805#DCP99_RS18215Stable P2CS identifier used across views.
GenomeGCF_001704805Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:155:4.56e-28:232:78:77- Raw architecture: Response_reg:5:1.18e-36:114:111:111#Trans_reg_C:155:4.56e-28:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001704805::NZ_MBGB02000041.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17273-19122Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCD45_RS18210RefSeq proteinWP_021376496.1
Context group ID
GCF_001704805::NZ_MBGB02000041.1::G00043Context members
DCP99_RS18210DCP99_RS18215
Partner locus tags
DCP99_RS18210DCP99_RS18215
Partner old locus tags
BCD45_RS18205BCD45_RS18210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021376496.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDCP99_RS18215Primary locus identifier stored in the genes table.
Old locus tagBCD45_RS18210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MBGB02000041.1Sequence record reported by the local genomic context database.
Genomic interval18 424-19 122 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 273-19 122 ntGCF_001704805::NZ_MBGB02000041.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001704805::NZ_MBGB02000041.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MBGB02000041.1All displayed genes belong to this local TCS context.
Neighborhood span17 273-19 122 nt1 850 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 273 nt19 122 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DCP99_RS18210GCF_001704805#DCP99_RS18210
HKClassic
17 273-18 388 nt · Reverse (-)
DCP99_RS18215GCF_001704805#DCP99_RS18215
RROmpRCurrent focus
18 424-19 122 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449185#QCW_RS16420Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1121685
Simplified PFAM architecture for RROC_1121685
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1121685
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_000449185#QCW_RS16420
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 39 over 39 total members. Page 1 / 1.
GCF_000449185#QCW_RS16420 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001704805
AssemblyASM170480v2 · Contighaploid
Genome composition4 137 970 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 92 · HK 41 · RR 49CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key