1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:1.18e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EDC95_RS11915
Response regulator OmpR family
Clostridioides difficile · GCF_005786645
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_005786645#EDC95_RS11915Stable P2CS identifier used across views.
GenomeGCF_005786645Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:155:4.56e-28:232:78:77- Raw architecture: Response_reg:5:1.18e-36:114:111:111#Trans_reg_C:155:4.56e-28:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_005786645::NZ_VALF01000014.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span100497-102346Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEDC95_11915RefSeq proteinWP_021376496.1
Context group ID
GCF_005786645::NZ_VALF01000014.1::G00010Context members
EDC95_RS11910EDC95_RS11915
Partner locus tags
EDC95_RS11910EDC95_RS11915
Partner old locus tags
EDC95_11910EDC95_11915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021376496.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEDC95_RS11915Primary locus identifier stored in the genes table.
Old locus tagEDC95_11915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VALF01000014.1Sequence record reported by the local genomic context database.
Genomic interval101 648-102 346 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span100 497-102 346 ntGCF_005786645::NZ_VALF01000014.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005786645::NZ_VALF01000014.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VALF01000014.1All displayed genes belong to this local TCS context.
Neighborhood span100 497-102 346 nt1 850 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
100 497 nt102 346 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EDC95_RS11910GCF_005786645#EDC95_RS11910
HKClassic
100 497-101 612 nt · Reverse (-)
EDC95_RS11915GCF_005786645#EDC95_RS11915
RROmpRCurrent focus
101 648-102 346 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449185#QCW_RS16420Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1121685
Simplified PFAM architecture for RROC_1121685
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1121685
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_000449185#QCW_RS16420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_005786645
AssemblyASM578664v1 · Contighaploid
Genome composition3 966 024 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 92 · HK 41 · RR 49CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key