1 Response_reg#1
4-113 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:4:6.6e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DCQ03_RS08560
Response regulator OmpR family
Clostridioides difficile · GCF_001704755
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001704755#DCQ03_RS08560Stable P2CS identifier used across views.
GenomeGCF_001704755Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 227 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:148:1.31e-29:223:76:77- Raw architecture: Response_reg:4:6.6e-32:113:111:111#Trans_reg_C:148:1.31e-29:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001704755::NZ_MBMH02000128.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span7550-8233Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCD44_RS08545RefSeq proteinWP_021364382.1
Context group ID
GCF_001704755::NZ_MBMH02000128.1::G00004Context members
DCQ03_RS08560
Partner locus tags
DCQ03_RS08560
Partner old locus tags
BCD44_RS08545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021364382.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDCQ03_RS08560Primary locus identifier stored in the genes table.
Old locus tagBCD44_RS08545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MBMH02000128.1Sequence record reported by the local genomic context database.
Genomic interval7 550-8 233 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 550-8 233 ntGCF_001704755::NZ_MBMH02000128.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001704755::NZ_MBMH02000128.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MBMH02000128.1All displayed genes belong to this local TCS context.
Neighborhood span7 550-8 233 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 550 nt8 233 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DCQ03_RS08560GCF_001704755#DCQ03_RS08560
RROmpRCurrent focus
7 550-8 233 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448745#QC1_RS05730Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1356921
Simplified PFAM architecture for RROC_1356921
PFAM domain coverage: 185 / 227 aa (81.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1356921
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_000448745#QC1_RS05730
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 281 total members. Page 1 / 6.
GCF_000448745#QC1_RS05730 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001704755
AssemblyASM170475v2 · Contighaploid
Genome composition3 975 153 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key