1 Response_reg#1
4-113 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:4:6.6e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU02_RS01975
Response regulator OmpR family
Clostridioides difficile · GCF_002301015
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002301015#BGU02_RS01975Stable P2CS identifier used across views.
GenomeGCF_002301015Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 227 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:148:1.31e-29:223:76:77- Raw architecture: Response_reg:4:6.6e-32:113:111:111#Trans_reg_C:148:1.31e-29:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002301015::NZ_MOPC01000002.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36552-38487Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU02_01935RefSeq proteinWP_021364382.1
Context group ID
GCF_002301015::NZ_MOPC01000002.1::G00006Context members
BGU02_RS01970BGU02_RS01975
Partner locus tags
BGU02_RS01970BGU02_RS01975
Partner old locus tags
BGU02_01930BGU02_01935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021364382.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU02_RS01975Primary locus identifier stored in the genes table.
Old locus tagBGU02_01935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOPC01000002.1Sequence record reported by the local genomic context database.
Genomic interval37 804-38 487 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span36 552-38 487 ntGCF_002301015::NZ_MOPC01000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301015::NZ_MOPC01000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOPC01000002.1All displayed genes belong to this local TCS context.
Neighborhood span36 552-38 487 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 552 nt38 487 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU02_RS01970GCF_002301015#BGU02_RS01970
HKClassic
36 552-37 793 nt · Reverse (-)
BGU02_RS01975GCF_002301015#BGU02_RS01975
RROmpRCurrent focus
37 804-38 487 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448745#QC1_RS05730Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1356921
Simplified PFAM architecture for RROC_1356921
PFAM domain coverage: 185 / 227 aa (81.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1356921
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_000448745#QC1_RS05730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301015
AssemblyASM230101v1 · Contighaploid
Genome composition4 133 323 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key