1 HAMP#1
127-204 aa · 78 aa · 17.7% of protein
Raw token
HAMP:127:0.000000234:204:78:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DCQ03_RS07225
Histidine kinase, Classic
Clostridioides difficile · GCF_001704755
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001704755#DCQ03_RS07225Stable P2CS identifier used across views.
GenomeGCF_001704755Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 440 aa (57.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation3 items
2 HisKA#2
216-281 aa · 66 aa · 15.0% of protein
Raw token
HisKA:216:0.00000000325:281:66:643 HATPase_c#3
331-437 aa · 107 aa · 24.3% of protein
Raw token
HATPase_c:331:3.46e-26:437:107:109- Raw architecture: HAMP:127:0.000000234:204:78:69#HisKA:216:0.00000000325:281:66:64#HATPase_c:331:3.46e-26:437:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001704755::NZ_MBMH02000097.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1769-3904Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCD44_RS07210RefSeq proteinWP_330400608.1
Context group ID
GCF_001704755::NZ_MBMH02000097.1::G00052Context members
DCQ03_RS07220DCQ03_RS07225
Partner locus tags
DCQ03_RS07220DCQ03_RS07225
Partner old locus tags
BCD44_RS07205BCD44_RS07210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330400608.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDCQ03_RS07225Primary locus identifier stored in the genes table.
Old locus tagBCD44_RS07210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MBMH02000097.1Sequence record reported by the local genomic context database.
Genomic interval2 582-3 904 nt1 323 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 769-3 904 ntGCF_001704755::NZ_MBMH02000097.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001704755::NZ_MBMH02000097.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MBMH02000097.1All displayed genes belong to this local TCS context.
Neighborhood span1 769-3 904 nt2 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 769 nt3 904 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DCQ03_RS07220GCF_001704755#DCQ03_RS07220
RROmpR
1 769-2 461 nt · Forward (+)
DCQ03_RS07225GCF_001704755#DCQ03_RS07225
HKClassicCurrent focus
2 582-3 904 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001704755#DCQ03_RS07225The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2073143
Simplified PFAM architecture for HKOC_2073143
PFAM domain coverage: 172 / 440 aa (39.1%)
1 aa440 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[217-281] | HATPase_c[331-437]
- Domain count: 2
- Matched identifier: HKOC_2073143
- Positioned domains: HisKA 217-281 ; HATPase_c 331-437
Cluster members and taxonomy
Representative gene: GCF_001704755#DCQ03_RS07225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001704755
AssemblyASM170475v2 · Contighaploid
Genome composition3 975 153 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key