1 HisKA_3#1
244-302 aa · 59 aa · 7.2% of protein
Raw token
HisKA_3:244:0.00000000000000147:302:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAD18_RS07965
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_001686165
ClassHKTypeClassicLength819 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001686165#BAD18_RS07965Stable P2CS identifier used across views.
GenomeGCF_001686165Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length819 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 819 aa (27.1%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa819 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
345-436 aa · 92 aa · 11.2% of protein
Raw token
HATPase_c:345:0.000000000000171:436:108:1093 HisKA_3#3
695-765 aa · 71 aa · 8.7% of protein
Raw token
HisKA_3:695:0.0000103:765:71:68- Raw architecture: HisKA_3:244:0.00000000000000147:302:59:68#HATPase_c:345:0.000000000000171:436:108:109#HisKA_3:695:0.0000103:765:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001686165::NZ_BCYI01000065.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43912-47283Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001686165::NZ_BCYI01000065.1::G00010Context members
BAD18_RS07960BAD18_RS07965
Partner locus tags
BAD18_RS07960BAD18_RS07965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065445772.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAD18_RS07965Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BCYI01000065.1Sequence record reported by the local genomic context database.
Genomic interval44 824-47 283 nt2 460 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 912-47 283 ntGCF_001686165::NZ_BCYI01000065.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001686165::NZ_BCYI01000065.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BCYI01000065.1All displayed genes belong to this local TCS context.
Neighborhood span43 912-47 283 nt3 372 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 912 nt47 283 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAD18_RS07960GCF_001686165#BAD18_RS07960
RRNarL
43 912-44 802 nt · Reverse (-)
BAD18_RS07965GCF_001686165#BAD18_RS07965
HKClassicCurrent focus
44 824-47 283 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001686165#BAD18_RS07965The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0530856
Simplified PFAM architecture for HKOC_0530856
PFAM domain coverage: 410 / 819 aa (50.1%)
1 aa819 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[13-137] | HisKA_3[244-305] | HATPase_c[345-437] | DUF7134[485-614]
- Domain count: 4
- Matched identifier: HKOC_0530856
- Positioned domains: DUF7134 13-137 ; HisKA_3 244-305 ; HATPase_c 345-437 ; DUF7134 485-614
Cluster members and taxonomy
Representative gene: GCF_001686165#BAD18_RS07965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_001686165
AssemblyASM168616v1 · Contighaploid
Genome composition2 540 238 bp · 60,5% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 24 · HK 10 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key