1 Response_reg#1
10-114 aa · 105 aa · 47.3% of protein
Raw token
Response_reg:10:0.00000000000952:114:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAD15_RS03990
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_001686105
ClassRRTypeNarLLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001686105#BAD15_RS03990Stable P2CS identifier used across views.
GenomeGCF_001686105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 222 aa (73.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-215 aa · 57 aa · 25.7% of protein
Raw token
HTH_LUXR:159:0.0000000000136:215:57:58- Raw architecture: Response_reg:10:0.00000000000952:114:105:111#HTH_LUXR:159:0.0000000000136:215:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001686105::NZ_BCYF01000076.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6930-7598Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001686105::NZ_BCYF01000076.1::G00004Context members
BAD15_RS03990
Partner locus tags
BAD15_RS03990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065435995.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAD15_RS03990Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BCYF01000076.1Sequence record reported by the local genomic context database.
Genomic interval6 930-7 598 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 930-7 598 ntGCF_001686105::NZ_BCYF01000076.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001686105::NZ_BCYF01000076.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BCYF01000076.1All displayed genes belong to this local TCS context.
Neighborhood span6 930-7 598 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 930 nt7 598 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BAD15_RS03990GCF_001686105#BAD15_RS03990
RRNarLCurrent focus
6 930-7 598 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001686105#BAD15_RS03990The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_1643105
Simplified PFAM architecture for RROC_1643105
PFAM domain coverage: 149 / 222 aa (67.1%)
1 aa222 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[10-115] | Sigma70_r4_2[162-204]
- Domain count: 2
- Matched identifier: RROC_1643105
- Positioned domains: Response_reg 10-115 ; Response_reg 10-115 ; Sigma70_r4_2 162-204 ; Sigma70_r4_2 162-204
Cluster members and taxonomy
Representative gene: GCF_001686105#BAD15_RS03990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_001686105
AssemblyASM168610v1 · Contighaploid
Genome composition2 749 833 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 31 · HK 10 · RR 18CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key