1 HisKA_3#1
212-275 aa · 64 aa · 14.3% of protein
Raw token
HisKA_3:212:0.00000000000000229:275:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAD06_RS03240
Histidine kinase, Classic
Bifidobacterium breve · GCF_001685925
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001685925#BAD06_RS03240Stable P2CS identifier used across views.
GenomeGCF_001685925Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 448 aa (40.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
322-440 aa · 119 aa · 26.6% of protein
Raw token
HATPase_c:322:0.0000000161:440:120:109- Raw architecture: HisKA_3:212:0.00000000000000229:275:64:68#HATPase_c:322:0.0000000161:440:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001685925::NZ_BCXW01000021.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37895-39891Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001685925::NZ_BCXW01000021.1::G00005Context members
BAD06_RS03240BAD06_RS03245
Partner locus tags
BAD06_RS03240BAD06_RS03245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065465203.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAD06_RS03240Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BCXW01000021.1Sequence record reported by the local genomic context database.
Genomic interval37 895-39 241 nt1 347 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 895-39 891 ntGCF_001685925::NZ_BCXW01000021.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001685925::NZ_BCXW01000021.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BCXW01000021.1All displayed genes belong to this local TCS context.
Neighborhood span37 895-39 891 nt1 997 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 895 nt39 891 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAD06_RS03240GCF_001685925#BAD06_RS03240
HKClassicCurrent focus
37 895-39 241 nt · Forward (+)
BAD06_RS03245GCF_001685925#BAD06_RS03245
RRNarL
39 238-39 891 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001685925#BAD06_RS03240The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1989466
Simplified PFAM architecture for HKOC_1989466
PFAM domain coverage: 66 / 448 aa (14.7%)
1 aa448 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[212-277]
- Domain count: 1
- Matched identifier: HKOC_1989466
- Positioned domains: HisKA_3 212-277
Cluster members and taxonomy
Representative gene: GCF_001685925#BAD06_RS03240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_001685925
AssemblyASM168592v1 · Contighaploid
Genome composition2 249 921 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 22 · HK 10 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key