1 HAMP#1
252-320 aa · 69 aa · 10.7% of protein
Raw token
HAMP:252:8.77e-16:320:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAD04_RS02650
Histidine kinase, Classic
Bifidobacterium breve · GCF_001685885
ClassHKTypeClassicLength643 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001685885#BAD04_RS02650Stable P2CS identifier used across views.
GenomeGCF_001685885Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length643 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage289 / 643 aa (44.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa643 aa
Domain-by-domain annotation3 items
2 HisKA#2
332-403 aa · 72 aa · 11.2% of protein
Raw token
HisKA:332:2.26e-17:403:72:643 HATPase_c#3
467-614 aa · 148 aa · 23.0% of protein
Raw token
HATPase_c:467:4.81e-21:614:148:109- Raw architecture: HAMP:252:8.77e-16:320:69:69#HisKA:332:2.26e-17:403:72:64#HATPase_c:467:4.81e-21:614:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001685885::NZ_BCXU01000017.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32706-35445Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001685885::NZ_BCXU01000017.1::G00006Context members
BAD04_RS02650BAD04_RS02655
Partner locus tags
BAD04_RS02650BAD04_RS02655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_439709132.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAD04_RS02650Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BCXU01000017.1Sequence record reported by the local genomic context database.
Genomic interval32 706-34 670 nt1 965 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 706-35 445 ntGCF_001685885::NZ_BCXU01000017.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001685885::NZ_BCXU01000017.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BCXU01000017.1All displayed genes belong to this local TCS context.
Neighborhood span32 706-35 445 nt2 740 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 706 nt35 445 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAD04_RS02650GCF_001685885#BAD04_RS02650
HKClassicCurrent focus
32 706-34 670 nt · Reverse (-)
BAD04_RS02655GCF_001685885#BAD04_RS02655
RROmpR
34 714-35 445 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001685885#BAD04_RS02650The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0913461
Simplified PFAM architecture for HKOC_0913461
PFAM domain coverage: 270 / 643 aa (42.0%)
1 aa643 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[269-320] | HisKA[333-403] | HATPase_c[467-613]
- Domain count: 3
- Matched identifier: HKOC_0913461
- Positioned domains: HAMP 269-320 ; HisKA 333-403 ; HATPase_c 467-613
Cluster members and taxonomy
Representative gene: GCF_001685885#BAD04_RS02650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_001685885
AssemblyASM168588v1 · Contighaploid
Genome composition2 287 657 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key