1 HisKA_3#1
212-275 aa · 64 aa · 14.3% of protein
Raw token
HisKA_3:212:0.00000000000000231:275:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAC95_RS05145
Histidine kinase, Classic
Bifidobacterium breve · GCF_001685705
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001685705#BAC95_RS05145Stable P2CS identifier used across views.
GenomeGCF_001685705Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 448 aa (40.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
322-440 aa · 119 aa · 26.6% of protein
Raw token
HATPase_c:322:0.000000000371:440:120:109- Raw architecture: HisKA_3:212:0.00000000000000231:275:64:68#HATPase_c:322:0.000000000371:440:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001685705::NZ_BCXL01000058.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7566-9562Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001685705::NZ_BCXL01000058.1::G00006Context members
BAC95_RS05145BAC95_RS05150
Partner locus tags
BAC95_RS05145BAC95_RS05150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065464624.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAC95_RS05145Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BCXL01000058.1Sequence record reported by the local genomic context database.
Genomic interval7 566-8 912 nt1 347 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 566-9 562 ntGCF_001685705::NZ_BCXL01000058.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001685705::NZ_BCXL01000058.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BCXL01000058.1All displayed genes belong to this local TCS context.
Neighborhood span7 566-9 562 nt1 997 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 566 nt9 562 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAC95_RS05145GCF_001685705#BAC95_RS05145
HKClassicCurrent focus
7 566-8 912 nt · Forward (+)
BAC95_RS05150GCF_001685705#BAC95_RS05150
RRNarL
8 909-9 562 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001685705#BAC95_RS05145The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1989463
Simplified PFAM architecture for HKOC_1989463
PFAM domain coverage: 185 / 448 aa (41.3%)
1 aa448 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[212-277] | HATPase_c[320-438]
- Domain count: 2
- Matched identifier: HKOC_1989463
- Positioned domains: HisKA_3 212-277 ; HATPase_c 320-438
Cluster members and taxonomy
Representative gene: GCF_001685705#BAC95_RS05145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_001685705
AssemblyASM168570v1 · Contighaploid
Genome composition2 660 803 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 18 · HK 8 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key