1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:1.89e-22:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A6280_RS18815
Response regulator OmpR family
Bacillus wiedmannii · GCF_001645505
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001645505#A6280_RS18815Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 225 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-223 aa · 75 aa · 33.3% of protein
Raw token
Trans_reg_C:149:5.8e-29:223:76:77- Raw architecture: Response_reg:4:1.89e-22:113:111:111#Trans_reg_C:149:5.8e-29:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001645505::NZ_LXFN01000033.1::G00044
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span383862-384539Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA6280_12400RefSeq proteinWP_064476226.1
Context group ID
GCF_001645505::NZ_LXFN01000033.1::G00044Context members
A6280_RS18815
Partner locus tags
A6280_RS18815
Partner old locus tags
A6280_12400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_064476226.1Primary protein accession used for annex mappings.
UniProt accessionA0A1A9PRY3Primary UniProt accession resolved in the annex database.
UniProt IDA0A1A9PRY3_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA6280_RS18815Primary locus identifier stored in the genes table.
Old locus tagA6280_12400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXFN01000033.1Sequence record reported by the local genomic context database.
Genomic interval383 862-384 539 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span383 862-384 539 ntGCF_001645505::NZ_LXFN01000033.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001645505::NZ_LXFN01000033.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXFN01000033.1All displayed genes belong to this local TCS context.
Neighborhood span383 862-384 539 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
383 862 nt384 539 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
A6280_RS18815GCF_001645505#A6280_RS18815
RROmpRCurrent focus
383 862-384 539 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001645505#A6280_RS18815The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1472801
Simplified PFAM architecture for RROC_1472801
PFAM domain coverage: 184 / 225 aa (81.8%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1472801
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_001645505#A6280_RS18815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001645505
AssemblyASM164550v1 · Contighaploid
Genome composition5 617 559 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 127 · HK 67 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key