1 sCache_like#1
35-149 aa · 115 aa · 19.6% of protein
Raw token
sCache_like:35:9.38e-26:149:117:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4088_RS24585
Histidine kinase, Classic
Bacillus cereus · GCF_001619355
ClassHKTypeClassicLength587 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001619355#B4088_RS24585Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
sCache_likeHAMPPASHisKAHATPase_c
Protein length587 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage470 / 587 aa (80.1%)Merged over positioned domains only.
Domain description1 sCache_like,1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation5 items
2 HAMP#2
165-234 aa · 70 aa · 11.9% of protein
Raw token
HAMP:165:0.00000000000752:234:70:693 PAS#3
245-351 aa · 107 aa · 18.2% of protein
Raw token
PAS:245:0.0000000000000268:351:112:1134 HisKA#4
360-427 aa · 68 aa · 11.6% of protein
Raw token
HisKA:360:1.21e-21:427:68:645 HATPase_c#5
472-581 aa · 110 aa · 18.7% of protein
Raw token
HATPase_c:472:5.98e-36:581:110:109- Raw architecture: sCache_like:35:9.38e-26:149:117:114#HAMP:165:0.00000000000752:234:70:69#PAS:245:0.0000000000000268:351:112:113#HisKA:360:1.21e-21:427:68:64#HATPase_c:472:5.98e-36:581:110:109
- Domain description: 1 sCache_like,1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001619355::NZ_LJKE01000094.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29539-32014Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4088_5011RefSeq proteinWP_063262652.1
Context group ID
GCF_001619355::NZ_LJKE01000094.1::G00027Context members
B4088_RS24580B4088_RS24585
Partner locus tags
B4088_RS24580B4088_RS24585
Partner old locus tags
B4088_5010B4088_5011
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_063262652.1Primary protein accession used for annex mappings.
UniProt accessionA0A1K0BD63Primary UniProt accession resolved in the annex database.
UniProt IDA0A1K0BD63_9BACIDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4088_RS24585Primary locus identifier stored in the genes table.
Old locus tagB4088_5011Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKE01000094.1Sequence record reported by the local genomic context database.
Genomic interval30 251-32 014 nt1 764 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 539-32 014 ntGCF_001619355::NZ_LJKE01000094.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619355::NZ_LJKE01000094.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKE01000094.1All displayed genes belong to this local TCS context.
Neighborhood span29 539-32 014 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 539 nt32 014 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B4088_RS24580GCF_001619355#B4088_RS24580
RROmpR
29 539-30 258 nt · Forward (+)
B4088_RS24585GCF_001619355#B4088_RS24585
HKClassicCurrent focus
30 251-32 014 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619355#B4088_RS24585The current gene is the representative for this cluster.
PFAM architecturesCache_like + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1126411
Simplified PFAM architecture for HKOC_1126411
PFAM domain coverage: 449 / 587 aa (76.5%)
1 aa587 aa
sCache_likeHAMPPASHisKAHATPase_c
- Simplified architecture: sCache_like + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: sCache_like[33-149] | HAMP[188-234] | PAS[245-351] | HisKA[360-426] | HATPase_c[472-582]
- Domain count: 5
- Matched identifier: HKOC_1126411
- Positioned domains: sCache_like 33-149 ; HAMP 188-234 ; PAS 245-351 ; HisKA 360-426 ; HATPase_c 472-582
Cluster members and taxonomy
Representative gene: GCF_001619355#B4088_RS24585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001619355
AssemblyASM161935v1 · Scaffoldhaploid
Genome composition6 432 609 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 109 · HK 56 · RR 53CheA 2 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key