1 HAMP#1
165-232 aa · 68 aa · 14.8% of protein
Raw token
HAMP:165:6.1e-17:232:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4088_RS03720
Histidine kinase, Classic
Bacillus cereus · GCF_001619355
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001619355#B4088_RS03720Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage227 / 458 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-303 aa · 60 aa · 13.1% of protein
Raw token
HisKA:244:0.00000000000479:303:61:643 HATPase_c#3
349-447 aa · 99 aa · 21.6% of protein
Raw token
HATPase_c:349:3.87e-19:447:102:109- Raw architecture: HAMP:165:6.1e-17:232:68:69#HisKA:244:0.00000000000479:303:61:64#HATPase_c:349:3.87e-19:447:102:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001619355::NZ_LJKE01000018.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52864-54880Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4088_0759RefSeq proteinWP_063259946.1
Context group ID
GCF_001619355::NZ_LJKE01000018.1::G00035Context members
B4088_RS03720B4088_RS03725
Partner locus tags
B4088_RS03720B4088_RS03725
Partner old locus tags
B4088_0759B4088_0760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_063259946.1Primary protein accession used for annex mappings.
UniProt accessionA0A164QHG9Primary UniProt accession resolved in the annex database.
UniProt IDA0A164QHG9_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4088_RS03720Primary locus identifier stored in the genes table.
Old locus tagB4088_0759Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKE01000018.1Sequence record reported by the local genomic context database.
Genomic interval52 864-54 240 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span52 864-54 880 ntGCF_001619355::NZ_LJKE01000018.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619355::NZ_LJKE01000018.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKE01000018.1All displayed genes belong to this local TCS context.
Neighborhood span52 864-54 880 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 864 nt54 880 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B4088_RS03720GCF_001619355#B4088_RS03720
HKClassicCurrent focus
52 864-54 240 nt · Reverse (-)
B4088_RS03725GCF_001619355#B4088_RS03725
RROmpR
54 233-54 880 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619355#B4088_RS03720The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1860445
Simplified PFAM architecture for HKOC_1860445
PFAM domain coverage: 205 / 458 aa (44.8%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[182-232] | HisKA[245-303] | HATPase_c[350-444]
- Domain count: 3
- Matched identifier: HKOC_1860445
- Positioned domains: HAMP 182-232 ; HisKA 245-303 ; HATPase_c 350-444
Cluster members and taxonomy
Representative gene: GCF_001619355#B4088_RS03720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001619355
AssemblyASM161935v1 · Scaffoldhaploid
Genome composition6 432 609 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 109 · HK 56 · RR 53CheA 2 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key