1 Response_reg#1
57-120 aa · 64 aa · 11.3% of protein
Raw token
Response_reg:57:0.0000000508:120:64:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4088_RS02920
Response regulator, unclassified
Bacillus cereus · GCF_001619355
ClassRRTypeunclassifiedLength564 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001619355#B4088_RS02920Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length564 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage64 / 564 aa (11.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa564 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:57:0.0000000508:120:64:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001619355::NZ_LJKE01000015.1::G00043
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span269161-270855Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4088_0592RefSeq proteinWP_063259812.1
Context group ID
GCF_001619355::NZ_LJKE01000015.1::G00043Context members
B4088_RS02920
Partner locus tags
B4088_RS02920
Partner old locus tags
B4088_0592
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_063259812.1Primary protein accession used for annex mappings.
UniProt accessionA0A161R7A3Primary UniProt accession resolved in the annex database.
UniProt IDA0A161R7A3_BACCEDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4088_RS02920Primary locus identifier stored in the genes table.
Old locus tagB4088_0592Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKE01000015.1Sequence record reported by the local genomic context database.
Genomic interval269 161-270 855 nt1 695 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span269 161-270 855 ntGCF_001619355::NZ_LJKE01000015.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619355::NZ_LJKE01000015.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKE01000015.1All displayed genes belong to this local TCS context.
Neighborhood span269 161-270 855 nt1 695 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
269 161 nt270 855 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B4088_RS02920GCF_001619355#B4088_RS02920
RRunclassifiedCurrent focus
269 161-270 855 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619355#B4088_RS02920The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0056747
Simplified PFAM architecture for RROC_0056747
PFAM domain coverage: 113 / 564 aa (20.0%)
1 aa564 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[11-123]
- Domain count: 1
- Matched identifier: RROC_0056747
- Positioned domains: Response_reg 11-123 ; Response_reg 11-123
Cluster members and taxonomy
Representative gene: GCF_001619355#B4088_RS02920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001619355
AssemblyASM161935v1 · Scaffoldhaploid
Genome composition6 432 609 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 109 · HK 56 · RR 53CheA 2 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key