1 Hpt#1
5-106 aa · 102 aa · 14.4% of protein
Raw token
Hpt:5:0.00000191:106:102:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4088_RS02590
Histidine kinase, CheA
Bacillus cereus · GCF_001619355
ClassHKTypeCheALength706 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001619355#B4088_RS02590Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length706 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage429 / 706 aa (60.8%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa706 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
317-379 aa · 63 aa · 8.9% of protein
Raw token
H-kinase_dim:317:0.0000000000565:379:67:673 HATPase_c#3
427-567 aa · 141 aa · 20.0% of protein
Raw token
HATPase_c:427:0.00000000000000338:567:141:1094 CheW#4
578-700 aa · 123 aa · 17.4% of protein
Raw token
CheW:578:0.000000000000308:700:130:138- Raw architecture: Hpt:5:0.00000191:106:102:84#H-kinase_dim:317:0.0000000000565:379:67:67#HATPase_c:427:0.00000000000000338:567:141:109#CheW:578:0.000000000000308:700:130:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001619355::NZ_LJKE01000015.1::G00041
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span204088-206208Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4088_0525RefSeq proteinWP_063259747.1
Context group ID
GCF_001619355::NZ_LJKE01000015.1::G00041Context members
B4088_RS02590
Partner locus tags
B4088_RS02590
Partner old locus tags
B4088_0525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_063259747.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4088_RS02590Primary locus identifier stored in the genes table.
Old locus tagB4088_0525Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKE01000015.1Sequence record reported by the local genomic context database.
Genomic interval204 088-206 208 nt2 121 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span204 088-206 208 ntGCF_001619355::NZ_LJKE01000015.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619355::NZ_LJKE01000015.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKE01000015.1All displayed genes belong to this local TCS context.
Neighborhood span204 088-206 208 nt2 121 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
204 088 nt206 208 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B4088_RS02590GCF_001619355#B4088_RS02590
HKCheACurrent focus
204 088-206 208 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619355#B4088_RS02590The current gene is the representative for this cluster.
PFAM architectureH-kinase_dim + HATPase_c + CheW3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0757633
Simplified PFAM architecture for HKOC_0757633
PFAM domain coverage: 328 / 706 aa (46.5%)
1 aa706 aa
H-kinase_dimHATPase_cCheW
- Simplified architecture: H-kinase_dim + HATPase_c + CheW
- Raw architecture: H-kinase_dim[316-379] | HATPase_c[428-567] | CheW[577-700]
- Domain count: 3
- Matched identifier: HKOC_0757633
- Positioned domains: H-kinase_dim 316-379 ; HATPase_c 428-567 ; CheW 577-700
Cluster members and taxonomy
Representative gene: GCF_001619355#B4088_RS02590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001619355
AssemblyASM161935v1 · Scaffoldhaploid
Genome composition6 432 609 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 109 · HK 56 · RR 53CheA 2 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key