1 Response_reg#1
3-93 aa · 91 aa · 37.3% of protein
Raw token
Response_reg:3:0.00000441:93:91:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4088_RS00535
Response regulator LytTR family
Bacillus cereus · GCF_001619355
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001619355#B4088_RS00535Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 244 aa (75.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-241 aa · 92 aa · 37.7% of protein
Raw token
LytTR:150:7.34e-20:241:97:98- Raw architecture: Response_reg:3:0.00000441:93:91:111#LytTR:150:7.34e-20:241:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001619355::NZ_LJKE01000008.1::G00044
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span33366-34100Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4088_0103RefSeq proteinWP_063259441.1
Context group ID
GCF_001619355::NZ_LJKE01000008.1::G00044Context members
B4088_RS00535
Partner locus tags
B4088_RS00535
Partner old locus tags
B4088_0103
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_063259441.1Primary protein accession used for annex mappings.
UniProt accessionA0A1Y6ATG6Primary UniProt accession resolved in the annex database.
UniProt IDA0A1Y6ATG6_9BACIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4088_RS00535Primary locus identifier stored in the genes table.
Old locus tagB4088_0103Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKE01000008.1Sequence record reported by the local genomic context database.
Genomic interval33 366-34 100 nt735 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span33 366-34 100 ntGCF_001619355::NZ_LJKE01000008.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619355::NZ_LJKE01000008.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKE01000008.1All displayed genes belong to this local TCS context.
Neighborhood span33 366-34 100 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 366 nt34 100 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B4088_RS00535GCF_001619355#B4088_RS00535
RRLytTRCurrent focus
33 366-34 100 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619355#B4088_RS00535The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0808597
Simplified PFAM architecture for RROC_0808597
PFAM domain coverage: 91 / 244 aa (37.3%)
1 aa244 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[150-240]
- Domain count: 1
- Matched identifier: RROC_0808597
- Positioned domains: LytTR 150-240 ; LytTR 150-240
Cluster members and taxonomy
Representative gene: GCF_001619355#B4088_RS00535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001619355
AssemblyASM161935v1 · Scaffoldhaploid
Genome composition6 432 609 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 109 · HK 56 · RR 53CheA 2 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key