1 HisKA#1
177-242 aa · 66 aa · 14.6% of protein
Raw token
HisKA:177:0.000000000118:242:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
APS66_RS05360
Histidine kinase, Classic
Bifidobacterium bifidum · GCF_001595435
ClassHKTypeClassicLength451 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001595435#APS66_RS05360Stable P2CS identifier used across views.
GenomeGCF_001595435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length451 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 451 aa (39.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa451 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
306-419 aa · 114 aa · 25.3% of protein
Raw token
HATPase_c:306:1.05e-27:419:114:109- Raw architecture: HisKA:177:0.000000000118:242:66:64#HATPase_c:306:1.05e-27:419:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001595435::NZ_LKUR01000019.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span138015-140227Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAPS66_06295RefSeq proteinWP_061870848.1
Context group ID
GCF_001595435::NZ_LKUR01000019.1::G00010Context members
APS66_RS05355APS66_RS05360
Partner locus tags
APS66_RS05355APS66_RS05360
Partner old locus tags
APS66_06290APS66_06295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_061870848.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAPS66_RS05360Primary locus identifier stored in the genes table.
Old locus tagAPS66_06295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LKUR01000019.1Sequence record reported by the local genomic context database.
Genomic interval138 872-140 227 nt1 356 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span138 015-140 227 ntGCF_001595435::NZ_LKUR01000019.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001595435::NZ_LKUR01000019.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LKUR01000019.1All displayed genes belong to this local TCS context.
Neighborhood span138 015-140 227 nt2 213 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 015 nt140 227 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
APS66_RS05355GCF_001595435#APS66_RS05355
RROmpR
138 015-138 719 nt · Reverse (-)
APS66_RS05360GCF_001595435#APS66_RS05360
HKClassicCurrent focus
138 872-140 227 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001595435#APS66_RS05360The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1951217
Simplified PFAM architecture for HKOC_1951217
PFAM domain coverage: 178 / 451 aa (39.5%)
1 aa451 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[177-241] | HATPase_c[306-418]
- Domain count: 2
- Matched identifier: HKOC_1951217
- Positioned domains: HisKA 177-241 ; HATPase_c 306-418
Cluster members and taxonomy
Representative gene: GCF_001595435#APS66_RS05360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_001595435
AssemblyASM159543v1 · Contighaploid
Genome composition2 285 457 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 30 · HK 13 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key