1 Response_reg#1
2-110 aa · 109 aa · 49.1% of protein
Raw token
Response_reg:2:7.73e-36:110:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AT270_RS00290
Response regulator OmpR family
Bacillus cereus · GCF_001583975
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001583975#AT270_RS00290Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 222 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
140-217 aa · 78 aa · 35.1% of protein
Raw token
Trans_reg_C:140:1.2e-27:217:78:77- Raw architecture: Response_reg:2:7.73e-36:110:110:111#Trans_reg_C:140:1.2e-27:217:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001583975::NZ_LONG01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span65548-67619Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAT270_01415RefSeq proteinWP_321540877.1
Context group ID
GCF_001583975::NZ_LONG01000001.1::G00002Context members
AT270_RS00285AT270_RS00290
Partner locus tags
AT270_RS00285AT270_RS00290
Partner old locus tags
AT270_01410AT270_01415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321540877.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAT270_RS00290Primary locus identifier stored in the genes table.
Old locus tagAT270_01415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LONG01000001.1Sequence record reported by the local genomic context database.
Genomic interval66 951-67 619 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span65 548-67 619 ntGCF_001583975::NZ_LONG01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001583975::NZ_LONG01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LONG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span65 548-67 619 nt2 072 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 548 nt67 619 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AT270_RS00285GCF_001583975#AT270_RS00285
HKClassic
65 548-66 939 nt · Reverse (-)
AT270_RS00290GCF_001583975#AT270_RS00290
RROmpRCurrent focus
66 951-67 619 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001583975#AT270_RS00290The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1642620
Simplified PFAM architecture for RROC_1642620
PFAM domain coverage: 185 / 222 aa (83.3%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-110] | Trans_reg_C[141-216]
- Domain count: 2
- Matched identifier: RROC_1642620
- Positioned domains: Response_reg 2-110 ; Response_reg 2-110 ; Trans_reg_C 141-216 ; Trans_reg_C 141-216
Cluster members and taxonomy
Representative gene: GCF_001583975#AT270_RS00290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001583975
AssemblyASM158397v1 · Contighaploid
Genome composition5 920 010 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 104 · HK 54 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key