1 HisKA#1
258-324 aa · 67 aa · 14.0% of protein
Raw token
HisKA:258:0.000000000901:324:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AT270_RS03570
Histidine kinase, Classic
Bacillus cereus · GCF_001583975
ClassHKTypeClassicLength480 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001583975#AT270_RS03570Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length480 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 480 aa (37.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa480 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
369-479 aa · 111 aa · 23.1% of protein
Raw token
HATPase_c:369:1.46e-21:479:112:109- Raw architecture: HisKA:258:0.000000000901:324:67:64#HATPase_c:369:1.46e-21:479:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001583975::NZ_LONG01000003.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span115532-117617Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAT270_06665RefSeq proteinWP_029440602.1
Context group ID
GCF_001583975::NZ_LONG01000003.1::G00005Context members
AT270_RS03565AT270_RS03570
Partner locus tags
AT270_RS03565AT270_RS03570
Partner old locus tags
AT270_06660AT270_06665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_029440602.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAT270_RS03570Primary locus identifier stored in the genes table.
Old locus tagAT270_06665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LONG01000003.1Sequence record reported by the local genomic context database.
Genomic interval116 175-117 617 nt1 443 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span115 532-117 617 ntGCF_001583975::NZ_LONG01000003.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001583975::NZ_LONG01000003.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LONG01000003.1All displayed genes belong to this local TCS context.
Neighborhood span115 532-117 617 nt2 086 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 532 nt117 617 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AT270_RS03565GCF_001583975#AT270_RS03565
RROmpR
115 532-116 197 nt · Forward (+)
AT270_RS03570GCF_001583975#AT270_RS03570
HKClassicCurrent focus
116 175-117 617 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000500585#LM1212_RS0127735Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1619587
Simplified PFAM architecture for HKOC_1619587
PFAM domain coverage: 174 / 480 aa (36.3%)
1 aa480 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[259-323] | HATPase_c[370-478]
- Domain count: 2
- Matched identifier: HKOC_1619587
- Positioned domains: HisKA 259-323 ; HATPase_c 370-478
Cluster members and taxonomy
Representative gene: GCF_000500585#LM1212_RS0127735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001583975
AssemblyASM158397v1 · Contighaploid
Genome composition5 920 010 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 104 · HK 54 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key