1 Response_reg#1
5-114 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:5:9.4e-39:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AT260_RS00335
Response regulator OmpR family
Bacillus wiedmannii · GCF_001583695
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001583695#AT260_RS00335Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 225 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-221 aa · 73 aa · 32.4% of protein
Raw token
Trans_reg_C:149:2.45e-27:221:74:77- Raw architecture: Response_reg:5:9.4e-39:114:111:111#Trans_reg_C:149:2.45e-27:221:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001583695::NZ_LOBC01000007.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72332-74079Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAT260_24415RefSeq proteinWP_061671856.1
Context group ID
GCF_001583695::NZ_LOBC01000007.1::G00001Context members
AT260_RS00335AT260_RS00340
Partner locus tags
AT260_RS00335AT260_RS00340
Partner old locus tags
AT260_24415AT260_24420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_061671856.1Primary protein accession used for annex mappings.
UniProt accessionA0AAU8F199Primary UniProt accession resolved in the annex database.
UniProt IDA0AAU8F199_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAT260_RS00335Primary locus identifier stored in the genes table.
Old locus tagAT260_24415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LOBC01000007.1Sequence record reported by the local genomic context database.
Genomic interval72 332-73 009 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span72 332-74 079 ntGCF_001583695::NZ_LOBC01000007.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001583695::NZ_LOBC01000007.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LOBC01000007.1All displayed genes belong to this local TCS context.
Neighborhood span72 332-74 079 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 332 nt74 079 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AT260_RS00335GCF_001583695#AT260_RS00335
RROmpRCurrent focus
72 332-73 009 nt · Forward (+)
AT260_RS00340GCF_001583695#AT260_RS00340
HKClassic
73 006-74 079 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001583695#AT260_RS00335The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1472323
Simplified PFAM architecture for RROC_1472323
PFAM domain coverage: 182 / 225 aa (80.9%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[149-221]
- Domain count: 2
- Matched identifier: RROC_1472323
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 149-221 ; Trans_reg_C 149-221
Cluster members and taxonomy
Representative gene: GCF_001583695#AT260_RS00335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001583695
AssemblyASM158369v1 · Contighaploid
Genome composition5 337 981 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 113 · HK 60 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key