1 HAMP#1
173-242 aa · 70 aa · 14.2% of protein
Raw token
HAMP:173:0.00000000000000338:242:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AT266_RS13790
Histidine kinase, Classic
Bacillus cereus · GCF_001583685
ClassHKTypeClassicLength492 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001583685#AT266_RS13790Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length492 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 492 aa (50.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa492 aa
Domain-by-domain annotation3 items
2 HisKA#2
267-332 aa · 66 aa · 13.4% of protein
Raw token
HisKA:267:0.0000000000000509:332:66:643 HATPase_c#3
378-489 aa · 112 aa · 22.8% of protein
Raw token
HATPase_c:378:1.11e-18:489:113:109- Raw architecture: HAMP:173:0.00000000000000338:242:70:69#HisKA:267:0.0000000000000509:332:66:64#HATPase_c:378:1.11e-18:489:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001583685::NZ_LOMW01000015.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span86186-88343Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAT266_07555RefSeq proteinWP_098453509.1
Context group ID
GCF_001583685::NZ_LOMW01000015.1::G00029Context members
AT266_RS13785AT266_RS13790
Partner locus tags
AT266_RS13785AT266_RS13790
Partner old locus tags
AT266_07550AT266_07555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098453509.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAT266_RS13790Primary locus identifier stored in the genes table.
Old locus tagAT266_07555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LOMW01000015.1Sequence record reported by the local genomic context database.
Genomic interval86 865-88 343 nt1 479 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span86 186-88 343 ntGCF_001583685::NZ_LOMW01000015.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001583685::NZ_LOMW01000015.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LOMW01000015.1All displayed genes belong to this local TCS context.
Neighborhood span86 186-88 343 nt2 158 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
86 186 nt88 343 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AT266_RS13785GCF_001583685#AT266_RS13785
RROmpR
86 186-86 851 nt · Forward (+)
AT266_RS13790GCF_001583685#AT266_RS13790
HKClassicCurrent focus
86 865-88 343 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001583685#AT266_RS13790The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1521665
Simplified PFAM architecture for HKOC_1521665
PFAM domain coverage: 229 / 492 aa (46.5%)
1 aa492 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[191-242] | HisKA[268-332] | HATPase_c[379-490]
- Domain count: 3
- Matched identifier: HKOC_1521665
- Positioned domains: HAMP 191-242 ; HisKA 268-332 ; HATPase_c 379-490
Cluster members and taxonomy
Representative gene: GCF_001583685#AT266_RS13790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001583685
AssemblyASM158368v1 · Contighaploid
Genome composition5 725 783 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 115 · HK 62 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key